C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prenyl (solanesyl) diphosphate synthase, subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038240 Pdss2 10090 + 10:43221486-43464882 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095725 Pdss2-001 43221486-43440602 protein_coding
  ENSMUST00000159139 Pdss2-006 43221600-43464882 protein_coding
  ENSMUST00000160108 Pdss2-002 43221517-43346519 retained_intron
  ENSMUST00000160823 Pdss2-004 43221486-43405395 nonsense_mediated_decay
  ENSMUST00000162008 Pdss2-005 43393921-43440248 protein_coding
  ENSMUST00000162758 Pdss2-003 43221736-43346116 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095725ENSMUST00000159139ENSMUST00000160108ENSMUST00000160823ENSMUST00000162008ENSMUST00000162758
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095725 4.409±1.57 2.886±0.49 5.538±0.32 4.299±1.46 2.573±1.72 6.789±1.45 6.763±1.43 9.225±0.97 3.549±1.18 2.204±0.96 6.785±0.96 3.994±1.63 3.070±1.08 1.422±0.66
ENSMUST00000159139 N/A 13.559±1.76 N/A N/A 2.302±0.00 8.078±1.51 N/A N/A N/A 2.255±0.36 N/A 4.991±2.17 N/A N/A
ENSMUST00000160108 N/A N/A N/A N/A N/A 4.977±0.00 N/A N/A 1.426±0.00 N/A N/A 1.016±0.00 N/A N/A
ENSMUST00000160823 N/A N/A N/A 0.375±0.00 0.176±0.00 N/A N/A N/A N/A 0.297±0.00 N/A N/A N/A 0.010±0.00
ENSMUST00000162008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.999±0.00 2.155±0.00 N/A
ENSMUST00000162758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.671±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA isoprenoid biosynthetic process
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IDA trans-octaprenyltranstransferase activity
GO:0050878 IMP regulation of body fluid levels
GO:0051290 IPI protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012563 pdss2 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein_coding Danio_rerio
ENSG00000164494 PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein_coding Homo_sapiens

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