C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prenyl (decaprenyl) diphosphate synthase, subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164494 PDSS2 9606 - 6:107152557-107459564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369031 PDSS2-002 107264186-107459564 protein_coding
  ENST00000369037 PDSS2-001 107152557-107459563 protein_coding
  ENST00000449027 PDSS2-003 107197841-107212159 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369031ENST00000369037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369031 1.037±0.00 1.668±0.00 N/A 0.701±0.00 N/A N/A N/A N/A N/A 0.721±0.00 N/A 3.383±0.41 2.657±0.36 1.355±0.00
ENST00000369037 1.560±0.00 1.339±0.00 0.400±0.00 1.669±0.26 2.880±0.88 2.906±0.13 3.110±1.26 5.382±1.59 4.032±1.96 1.728±0.43 1.055±0.02 3.245±0.37 1.658±0.56 1.590±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OZ CIL_0001OZ_0002 CGP 6:107065182-107459564
CIL_0001OU CIL_0001OU_0002 CGP 6:107152557-107660167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA:IEA isoprenoid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IEA trans-octaprenyltranstransferase activity
GO:0050878 IEA regulation of body fluid levels
GO:0051290 IEA protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012563 pdss2 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein_coding Danio_rerio
ENSMUSG00000038240 Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 protein_coding Mus_musculus

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