C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD and ring finger domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122143 Phrf1-009 ENSMUSG00000038611 10090 + 7:141243499-141262595 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENSMUST00000122143
Transcript ID Muscle Ovary
ENSMUST00000122143 0.579±0.00 4.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0003 CGP 7:141215860-141262750
CIL_0006RQ CIL_0006RQ_0003 CGP 7:141228784-141266481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0035556 IEA intracellular signal transduction
GO:0070063 ISS RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264555 PHRF1-001 protein_coding Homo_sapiens 0 466
ENST00000413872 PHRF1-007 protein_coding Homo_sapiens 0 466
ENST00000416188 PHRF1-008 protein_coding Homo_sapiens 0 466
ENST00000533464 PHRF1-003 protein_coding Homo_sapiens 0 466
ENST00000534320 PHRF1-004 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000616346 PHRF1-201 protein_coding Homo_sapiens 0 466

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