C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD and ring finger domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106027 Phrf1-001 ENSMUSG00000038611 10090 + 7:141228789-141262626 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106027
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106027 5.517±2.72 8.962±1.34 3.777±1.58 9.303±5.54 4.624±2.04 7.310±0.73 2.124±0.33 4.080±0.48 4.597±2.08 5.362±0.74 2.188±0.89 8.084±7.07 16.855±8.34 6.744±6.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S8 CIL_0006S8_0003 CGP 7:141215860-141262750
CIL_0006RQ CIL_0006RQ_0003 CGP 7:141228784-141266481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0019904 IEA protein domain specific binding
GO:0035556 IEA intracellular signal transduction
GO:0070063 ISS RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264555 PHRF1-001 protein_coding Homo_sapiens 0 1251
ENST00000413872 PHRF1-007 protein_coding Homo_sapiens 0 1218
ENST00000416188 PHRF1-008 protein_coding Homo_sapiens 0 1230
ENST00000533464 PHRF1-003 protein_coding Homo_sapiens 0 1206
ENST00000534320 PHRF1-004 nonsense_mediated_decay Homo_sapiens 0 1251
ENST00000616346 PHRF1-201 protein_coding Homo_sapiens 0 1251

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