C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 6 superfamily member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038623 Tm6sf1 10090 + 7:81859001-81884434 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041890 Tm6sf1-001 81859001-81884071 protein_coding
  ENSMUST00000119543 Tm6sf1-005 81862687-81883419 protein_coding
  ENSMUST00000124616 Tm6sf1-003 81859020-81873877 retained_intron
  ENSMUST00000126334 Tm6sf1-002 81859151-81884434 nonsense_mediated_decay
  ENSMUST00000130006 Tm6sf1-007 81873493-81883407 retained_intron
  ENSMUST00000134861 Tm6sf1-006 81859118-81865398 processed_transcript
  ENSMUST00000147977 Tm6sf1-004 81869733-81872415 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041890ENSMUST00000119543ENSMUST00000124616ENSMUST00000130006ENSMUST00000134861ENSMUST00000147977
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041890 5.392±0.00 4.808±0.40 N/A 9.288±3.09 1.905±0.27 2.009±0.00 2.026±0.65 N/A 9.289±2.37 N/A 7.973±1.43 N/A N/A
ENSMUST00000119543 13.796±2.00 N/A 8.272±0.00 14.675±8.30 N/A 5.552±0.78 4.660±1.50 3.861±2.88 14.875±2.96 3.028±0.59 18.485±0.00 2.952±1.31 3.686±0.10
ENSMUST00000124616 N/A N/A 2.005±0.00 2.588±0.00 0.801±0.00 N/A N/A 1.258±0.65 N/A 0.434±0.07 N/A 0.624±0.26 N/A
ENSMUST00000130006 13.011±1.67 N/A N/A 30.106±10.18 5.140±0.00 4.804±0.15 4.154±0.81 1.584±0.59 16.349±1.00 N/A N/A N/A N/A
ENSMUST00000134861 12.481±0.00 9.357±4.18 N/A 14.268±3.25 4.500±1.17 N/A 3.546±0.60 0.798±0.14 12.900±2.99 N/A 9.623±1.80 N/A N/A
ENSMUST00000147977 3.265±0.18 N/A N/A 4.115±0.95 1.339±0.00 N/A N/A N/A 5.015±0.80 N/A 4.854±0.22 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0002 CGP 7:81859001-81934473

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136404 TM6SF1 transmembrane 6 superfamily member 1 protein_coding Homo_sapiens

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