C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane 6 superfamily member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130006 Tm6sf1-007 ENSMUSG00000038623 10090 + 7:81873493-81883407 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungENSMUST00000130006
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung
ENSMUST00000130006 13.011±1.67 30.106±10.18 5.140±0.00 4.804±0.15 4.154±0.81 1.584±0.59 16.349±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0002 CGP 7:81859001-81934473

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258909 TM6SF1-004 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000299633 HDGFRP3-001 protein_coding Homo_sapiens 0 263
ENST00000322019 TM6SF1-001 protein_coding Homo_sapiens 0 649
ENST00000379384 TM6SF1-003 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000379390 TM6SF1-006 protein_coding Homo_sapiens 0 394
ENST00000565774 TM6SF1-005 protein_coding Homo_sapiens 0 390
ENST00000565982 TM6SF1-009 protein_coding Homo_sapiens 0 217

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