C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043757 Abcf1-001 ENSMUSG00000038762 10090 - 17:35956819-35969761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043757 24.470±2.00 26.274±4.32 24.997±0.42 28.892±3.39 24.348±5.47 27.641±2.09 20.586±2.71 23.595±0.99 27.821±11.92 23.425±0.67 26.427±0.94 35.922±5.90 73.064±33.42 52.851±3.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 ISS ATP binding
GO:0005635 ISS nuclear envelope
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0005840 IEA ribosome
GO:0006200 IEA ATP catabolic process
GO:0006413 ISS translational initiation
GO:0008494 ISS translation activator activity
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0042788 ISS polysomal ribosome
GO:0043022 ISS ribosome binding
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326195 ABCF1-001 protein_coding Homo_sapiens 0 2737
ENST00000376545 ABCF1-002 protein_coding Homo_sapiens 0 2150
ENST00000383587 ABCF1-002 protein_coding Homo_sapiens 0 2145
ENST00000383588 ABCF1-001 protein_coding Homo_sapiens 0 2732
ENST00000400609 ABCF1-004 protein_coding Homo_sapiens 0 516
ENST00000412443 ABCF1-002 protein_coding Homo_sapiens 0 2150
ENST00000416932 ABCF1-004 protein_coding Homo_sapiens 0 516
ENST00000419893 ABCF1-001 protein_coding Homo_sapiens 0 2732
ENST00000420257 ABCF1-002 protein_coding Homo_sapiens 0 2145
ENST00000421042 ABCF1-002 protein_coding Homo_sapiens 0 2150
ENST00000421608 ABCF1-004 protein_coding Homo_sapiens 0 521
ENST00000423247 ABCF1-001 protein_coding Homo_sapiens 0 2732
ENST00000426219 ABCF1-001 protein_coding Homo_sapiens 0 2737
ENST00000448939 ABCF1-002 protein_coding Homo_sapiens 0 2145
ENST00000452530 ABCF1-002 protein_coding Homo_sapiens 0 2145
ENST00000454094 ABCF1-004 protein_coding Homo_sapiens 0 521
ENST00000456791 ABCF1-004 protein_coding Homo_sapiens 0 516
ENST00000457078 ABCF1-001 protein_coding Homo_sapiens 0 2737
ENST00000457111 ABCF1-001 protein_coding Homo_sapiens 0 2732
ENST00000457970 ABCF1-004 protein_coding Homo_sapiens 0 516
ENST00000461877 ABCF1-007 retained_intron Homo_sapiens 0 630
ENST00000470464 ABCF1-005 processed_transcript Homo_sapiens 0 2189
ENST00000472245 ABCF1-007 retained_intron Homo_sapiens 0 636
ENST00000475528 ABCF1-005 processed_transcript Homo_sapiens 0 2189
ENST00000475993 ABCF1-005 nonsense_mediated_decay Homo_sapiens 0 2194
ENST00000479321 ABCF1-007 retained_intron Homo_sapiens 0 630
ENST00000479542 ABCF1-007 retained_intron Homo_sapiens 0 636
ENST00000485585 ABCF1-005 processed_transcript Homo_sapiens 0 2189
ENST00000486105 ABCF1-005 processed_transcript Homo_sapiens 0 2194
ENST00000490343 ABCF1-007 retained_intron Homo_sapiens 0 630
ENST00000491571 ABCF1-007 retained_intron Homo_sapiens 0 636
ENST00000494321 ABCF1-007 retained_intron Homo_sapiens 0 630
ENST00000494413 ABCF1-005 processed_transcript Homo_sapiens 0 2194
ENST00000495194 ABCF1-005 processed_transcript Homo_sapiens 0 2189

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