C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: catenin (cadherin associated protein), alpha-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038816 Ctnnal1 10090 - 4:56810935-56865188 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045142 Ctnnal1-001 56810935-56865188 protein_coding
  ENSMUST00000107612 Ctnnal1-005 56840746-56865154 protein_coding
  ENSMUST00000127908 Ctnnal1-003 56824058-56839667 processed_transcript
  ENSMUST00000131231 Ctnnal1-009 56812140-56814319 processed_transcript
  ENSMUST00000132764 Ctnnal1-004 56844467-56846092 processed_transcript
  ENSMUST00000134754 Ctnnal1-002 56826003-56865168 processed_transcript
  ENSMUST00000134915 Ctnnal1-008 56816989-56817656 processed_transcript
  ENSMUST00000136308 Ctnnal1-007 56826266-56829853 processed_transcript
  ENSMUST00000154511 Ctnnal1-006 56829525-56838584 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045142ENSMUST00000107612ENSMUST00000127908ENSMUST00000134915ENSMUST00000136308ENSMUST00000154511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045142 2.582±0.47 2.571±1.06 20.421±6.88 3.839±2.09 1.335±0.36 1.863±0.43 3.044±0.60 3.785±0.54 2.323±1.78 2.003±0.27 1.504±0.45 4.636±3.47 4.280±1.42 1.379±0.49
ENSMUST00000107612 N/A 9.606±7.29 N/A N/A N/A N/A N/A N/A 0.557±0.06 N/A N/A N/A N/A N/A
ENSMUST00000127908 1.123±0.00 N/A N/A 1.208±0.36 0.363±0.06 N/A N/A 0.953±0.08 0.124±0.00 N/A 0.187±0.00 1.128±0.06 N/A N/A
ENSMUST00000134915 N/A N/A N/A 10.426±0.00 N/A N/A N/A N/A N/A N/A N/A 20.553±0.00 13.687±5.76 N/A
ENSMUST00000136308 7.516±1.57 N/A N/A N/A 3.298±0.60 N/A N/A N/A N/A N/A N/A 9.392±8.99 15.558±0.19 6.830±0.00
ENSMUST00000154511 N/A N/A N/A N/A N/A 2.209±0.00 N/A N/A N/A N/A N/A 3.661±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000226 CIL_000226_0003 CGP 4:56802345-56865188
CIL_0001GL CIL_0001GL_0002 CGP 4:56810935-56947437

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007266 IEA Rho protein signal transduction
GO:0015629 IEA actin cytoskeleton
GO:0045296 IEA cadherin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018162 ctnnal1 catenin (cadherin-associated protein), alpha-like 1 protein_coding Danio_rerio
ENSG00000119326 CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 protein_coding Homo_sapiens

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