C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 4B (RBP1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039219 Arid4b 10090 + 13:14063232-14199603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039538 Arid4b-201 14063792-14199603 protein_coding
  ENSMUST00000110533 Arid4b-003 14063799-14165682 protein_coding
  ENSMUST00000110534 Arid4b-001 14063792-14199362 protein_coding
  ENSMUST00000110536 Arid4b-004 14063785-14199367 protein_coding
  ENSMUST00000129488 Arid4b-002 14063784-14169960 protein_coding
  ENSMUST00000148941 Arid4b-005 14177983-14191234 processed_transcript
  ENSMUST00000149579 Arid4b-006 14169979-14193725 protein_coding
  ENSMUST00000151151 Arid4b-009 14191177-14197754 processed_transcript
  ENSMUST00000151182 Arid4b-008 14064055-14120219 processed_transcript
  ENSMUST00000155553 Arid4b-007 14063232-14126479 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039538ENSMUST00000110533ENSMUST00000110534ENSMUST00000110536ENSMUST00000129488ENSMUST00000149579
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039538 1.872±0.00 2.595±1.12 N/A N/A 3.107±0.60 1.705±0.58 N/A N/A N/A 1.648±0.00 N/A 3.127±1.51 N/A N/A
ENSMUST00000110533 N/A 3.821±0.36 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110534 1.738±0.63 2.814±0.56 6.310±0.24 12.634±5.24 2.222±0.81 1.502±0.56 1.787±0.31 2.244±0.68 3.099±1.76 3.457±0.43 1.527±0.30 5.060±3.43 7.312±2.14 4.355±4.56
ENSMUST00000110536 1.311±0.00 1.058±0.00 N/A 4.499±0.00 N/A N/A N/A N/A N/A N/A 0.473±0.00 N/A N/A 0.938±0.00
ENSMUST00000129488 N/A N/A N/A 9.257±0.00 N/A N/A N/A N/A N/A N/A N/A 13.182±0.00 N/A 21.877±0.00
ENSMUST00000149579 0.881±0.00 1.724±0.00 2.765±0.00 6.227±0.00 1.989±0.00 1.065±0.21 N/A N/A 0.788±0.19 1.413±0.12 N/A 3.209±2.26 4.564±0.77 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090656 tomm20a translocase of outer mitochondrial membrane 20 homolog a (yeast) protein_coding Danio_rerio
ENSG00000054267 ARID4B AT rich interactive domain 4B (RBP1-like) protein_coding Homo_sapiens

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