C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4B (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110534 Arid4b-001 ENSMUSG00000039219 10090 + 13:14063792-14199362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110534
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110534 1.738±0.63 2.814±0.56 6.310±0.24 12.634±5.24 2.222±0.81 1.502±0.56 1.787±0.31 2.244±0.68 3.099±1.76 3.457±0.43 1.527±0.30 5.060±3.43 7.312±2.14 4.355±4.56

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264183 ARID4B-201 protein_coding Homo_sapiens 0 7143
ENST00000349213 ARID4B-001 protein_coding Homo_sapiens 0 4680
ENST00000366603 ARID4B-004 protein_coding Homo_sapiens 0 7142
ENST00000418304 ARID4B-007 protein_coding Homo_sapiens 0 2230
ENST00000421364 ARID4B-010 nonsense_mediated_decay Homo_sapiens 0 4348
ENST00000444620 ARID4B-006 protein_coding Homo_sapiens 0 1886
ENST00000466653 ARID4B-002 retained_intron Homo_sapiens 0 1325
ENST00000471257 ARID4B-003 retained_intron Homo_sapiens 0 3288
ENST00000474953 ARID4B-012 nonsense_mediated_decay Homo_sapiens 0 2113
ENST00000491632 ARID4B-005 retained_intron Homo_sapiens 0 2054
ENST00000494543 ARID4B-009 processed_transcript Homo_sapiens 1e-18 97

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