C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 4B (RBP1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054267 ARID4B 9606 - 1:235131634-235328219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264183 ARID4B-201 235166895-235328217 protein_coding
  ENST00000349213 ARID4B-001 235166895-235328219 protein_coding
  ENST00000366603 ARID4B-004 235166895-235327487 protein_coding
  ENST00000418304 ARID4B-007 235219927-235328196 protein_coding
  ENST00000421364 ARID4B-010 235167884-235328134 nonsense_mediated_decay
  ENST00000444620 ARID4B-006 235177787-235213916 protein_coding
  ENST00000462969 ARID4B-008 235326791-235327863 retained_intron
  ENST00000466653 ARID4B-002 235228311-235328217 retained_intron
  ENST00000471257 ARID4B-003 235180139-235234492 retained_intron
  ENST00000474401 ARID4B-011 235172647-235175643 retained_intron
  ENST00000474953 ARID4B-012 235131634-235194077 nonsense_mediated_decay
  ENST00000491632 ARID4B-005 235177616-235328168 retained_intron
  ENST00000494543 ARID4B-009 235177856-235181865 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264183ENST00000349213ENST00000366603ENST00000418304ENST00000421364ENST00000471257ENST00000491632
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264183 5.604±0.00 13.687±0.00 1.723±0.00 4.119±2.03 3.921±0.08 4.818±2.11 1.647±0.97 10.974±0.00 4.600±0.00 3.930±0.00 N/A 4.659±1.84 4.178±2.67 11.766±0.22
ENST00000349213 N/A N/A 1.394±0.00 3.389±0.00 N/A N/A 0.404±0.00 N/A N/A 5.167±0.00 N/A 1.990±0.00 N/A N/A
ENST00000366603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.71 7.536±0.00 1.885±0.00 9.452±0.00
ENST00000418304 N/A N/A N/A N/A N/A 8.172±0.00 1.418±0.00 N/A N/A N/A N/A N/A 15.278±0.00 N/A
ENST00000421364 N/A N/A 1.465±0.00 N/A 2.468±0.00 N/A N/A N/A N/A N/A N/A 1.901±0.00 N/A N/A
ENST00000471257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.082±0.00 N/A
ENST00000491632 N/A N/A N/A N/A 3.510±0.00 N/A N/A N/A 3.754±0.00 N/A N/A N/A N/A 10.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KF CIL_0006KF_0001 CGP 1:235109336-235161457
CIL_0000L1 CIL_0000L1_0002 CGP 1:235131634-235344532

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006349 IEA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0034773 IEA histone H4-K20 trimethylation
GO:0036124 IEA histone H3-K9 trimethylation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0097368 IEA establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090656 tomm20a translocase of outer mitochondrial membrane 20 homolog a (yeast) protein_coding Danio_rerio
ENSMUSG00000039219 Arid4b AT rich interactive domain 4B (RBP1-like) protein_coding Mus_musculus

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