C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4B (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039538 Arid4b-201 ENSMUSG00000039219 10090 + 13:14063792-14199603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLungOvaryENSMUST00000039538
Transcript ID Adipose Adrenal Breast Colon Lung Ovary
ENSMUST00000039538 1.872±0.00 2.595±1.12 3.107±0.60 1.705±0.58 1.648±0.00 3.127±1.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264183 ARID4B-201 protein_coding Homo_sapiens 0 4693
ENST00000349213 ARID4B-001 protein_coding Homo_sapiens 0 6743
ENST00000366603 ARID4B-004 protein_coding Homo_sapiens 0 4693
ENST00000418304 ARID4B-007 protein_coding Homo_sapiens 0 2230
ENST00000421364 ARID4B-010 nonsense_mediated_decay Homo_sapiens 0 2058
ENST00000444620 ARID4B-006 protein_coding Homo_sapiens 0 1884
ENST00000466653 ARID4B-002 retained_intron Homo_sapiens 0 1325
ENST00000471257 ARID4B-003 retained_intron Homo_sapiens 0 1707
ENST00000474953 ARID4B-012 nonsense_mediated_decay Homo_sapiens 0 2113
ENST00000491632 ARID4B-005 retained_intron Homo_sapiens 0 3934
ENST00000494543 ARID4B-009 processed_transcript Homo_sapiens 1e-18 97

Loading