C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: contactin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039488 Cntn5 10090 - 9:9660891-10904775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074133 Cntn5-201 9661363-10419090 protein_coding
  ENSMUST00000160216 Cntn5-001 9660969-10904775 protein_coding
  ENSMUST00000160358 Cntn5-003 10640511-10904449 retained_intron
  ENSMUST00000162484 Cntn5-002 9660891-10904726 protein_coding
  ENSMUST00000179049 Cntn5-202 9661363-10419090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074133ENSMUST00000160216ENSMUST00000162484ENSMUST00000179049
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074133 0.032±0.00 N/A N/A 0.476±0.00 N/A 0.039±0.00 0.046±0.01 0.003±0.00 N/A N/A 0.073±0.03 0.016±0.00 N/A
ENSMUST00000160216 N/A N/A 0.012±0.00 0.584±0.00 0.016±0.00 N/A N/A N/A 0.010±0.00 N/A 0.070±0.00 0.009±0.00 N/A
ENSMUST00000162484 N/A N/A N/A N/A N/A 0.155±0.03 N/A N/A N/A N/A 0.050±0.03 0.005±0.00 0.219±0.09
ENSMUST00000179049 0.017±0.00 0.060±0.01 0.007±0.00 N/A 0.071±0.05 0.050±0.00 0.034±0.00 0.003±0.00 0.022±0.00 0.014±0.00 N/A 0.009±0.00 0.145±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CN CIL_0003CN_0002 CGP 9:8994329-10904775

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007605 IMP sensory perception of sound
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021584 cntn5 contactin 5 protein_coding Danio_rerio
ENSG00000149972 CNTN5 contactin 5 protein_coding Homo_sapiens

Loading