C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan zeta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039539 Sgcz 10090 - 8:37522298-38661508 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118896 Sgcz-001 37522554-38661508 protein_coding
  ENSMUST00000135764 Sgcz-002 37522298-38661508 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverOvaryPlacentaENSMUST00000118896
Transcript ID Bladder Brain Breast Kidney Liver Ovary Placenta
ENSMUST00000118896 0.099±0.03 0.336±0.10 0.042±0.00 0.061±0.05 0.040±0.03 0.094±0.02 0.008±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000459 CIL_000459_0002 CGP 8:36993575-38661508
CIL_00006V CIL_00006V_0003 CGP 8:37522298-39165112

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0016012 IDA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090659 SGCZ sarcoglycan, zeta protein_coding Danio_rerio
ENSG00000185053 SGCZ sarcoglycan, zeta protein_coding Homo_sapiens

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