C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090659-ENSDARG00000078854 CGP 7955 1:14345879-14908864
GeneTranscriptPositionBiotype
ENSDARG00000078854 (TUSC3 (1 of 2))
tumor suppressor candidate 3 		ENSDART00000054707 (TUSC3 (1 of 2)-201) 14899827-14908864 protein_coding
ENSDARG00000090659 (SGCZ)
sarcoglycan, zeta 		ENSDART00000130418 (SGCZ-201) 14345879-14594464 protein_coding
CIL_00006V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185053-ENSG00000104723 CGP 9606 8:14089864-15766649
GeneTranscriptPositionBiotype
ENSG00000104723 (TUSC3)
tumor suppressor candidate 3 		ENST00000382020 (TUSC3-001) 15540223-15766649 protein_coding
ENST00000503191 (TUSC3-011) 15417215-15673836 processed_transcript
ENST00000503731 (TUSC3-007) 15540283-15764459 protein_coding
ENST00000506802 (TUSC3-004) 15540233-15764613 protein_coding
ENST00000507316 (TUSC3-009) 15743444-15758277 retained_intron
ENST00000507400 (TUSC3-012) 15561619-15673836 processed_transcript
ENST00000508446 (TUSC3-010) 15673763-15764418 processed_transcript
ENST00000509177 (TUSC3-013) 15623078-15651017 retained_intron
ENST00000509380 (TUSC3-006) 15540281-15733645 protein_coding
ENST00000510836 (TUSC3-005) 15540279-15764629 nonsense_mediated_decay
ENST00000511342 (TUSC3-014) 15743530-15748846 retained_intron
ENST00000511783 (TUSC3-008) 15623080-15758277 protein_coding
ENST00000515859 (TUSC3-003) 15540227-15764661 nonsense_mediated_decay
ENSG00000185053 (SGCZ)
sarcoglycan, zeta 		ENST00000382080 (SGCZ-001) 14089864-15238339 protein_coding
ENST00000421524 (SGCZ-002) 14090374-14554926 protein_coding
ENST00000613692 (SGCZ-201) 14089865-14324209 protein_coding
ENSG00000214366 (RP11-138H14.1)
 ENST00000528228 (RP11-138H14.1-001) 14309033-14309672 processed_pseudogene
ENSG00000248423 (RP11-235P11.1)
 ENST00000506768 (RP11-235P11.1-001) 15688914-15689562 processed_pseudogene
ENSG00000255076 (CTD-2023J5.1)
 ENST00000532973 (CTD-2023J5.1-001) 14879057-14879819 sense_intronic
ENSG00000263415 (AC021760.1)
 ENST00000580600 (AC021760.1-201) 14514741-14514865 miRNA
ENSG00000274069 (AC091559.2)
 ENST00000622673 (AC091559.2-201) 15459830-15459911 miRNA
CIL_00006V_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039539-ENSMUSG00000039530 CGP 10090 8:37522298-39165112
GeneTranscriptPositionBiotype
ENSMUSG00000039530 (Tusc3)
tumor suppressor candidate 3 		ENSMUST00000167992 (Tusc3-201) 39005867-39165112 protein_coding
ENSMUST00000169034 (Tusc3-202) 39005908-39165112 protein_coding
ENSMUSG00000039539 (Sgcz)
sarcoglycan zeta 		ENSMUST00000118896 (Sgcz-001) 37522554-38661508 protein_coding
ENSMUST00000135764 (Sgcz-002) 37522298-38661508 nonsense_mediated_decay
ENSMUSG00000081316 (Gm16205)
predicted gene 16205 		ENSMUST00000117720 (Gm16205-001) 37787666-37788692 processed_pseudogene
ENSMUSG00000081517 (Gm16204)
predicted gene 16204 		ENSMUST00000117864 (Gm16204-001) 38076714-38079639 processed_pseudogene
ENSMUSG00000083125 (Gm16203)
predicted gene 16203 		ENSMUST00000120023 (Gm16203-001) 38288852-38289347 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006V_0001ENSDARG00000078854ENSDART00000054707ENSDARG00000090659ENSDART00000130418CIL_00006V_0002ENSG00000104723ENST00000382020ENST00000503191ENST00000503731ENST00000506802ENST00000507316ENST00000507400ENST00000508446ENST00000509177ENST00000509380ENST00000510836ENST00000511342ENST00000511783ENST00000515859ENSG00000185053ENST00000382080ENST00000421524ENST00000613692ENSG00000214366ENST00000528228ENSG00000248423ENST00000506768ENSG00000255076ENST00000532973ENSG00000263415ENST00000580600ENSG00000274069ENST00000622673CIL_00006V_0003ENSMUSG00000039530ENSMUST00000167992ENSMUST00000169034ENSMUSG00000039539ENSMUST00000118896ENSMUST00000135764ENSMUSG00000081316ENSMUST00000117720ENSMUSG00000081517ENSMUST00000117864ENSMUSG00000083125ENSMUST00000120023
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006V_0001ENSDARG00000078854ENSDART00000054707ENSDARG00000090659ENSDART00000130418CIL_00006V_0002ENSG00000104723ENST00000382020ENST00000503731ENST00000506802ENST00000507316ENST00000507400ENST00000511783ENST00000515859ENSG00000185053ENST00000382080ENST00000421524ENST00000613692ENSG00000214366ENST00000528228ENSG00000248423ENST00000506768ENSG00000255076ENST00000532973ENSG00000263415ENST00000580600ENSG00000274069ENST00000622673CIL_00006V_0003ENSMUSG00000039530ENSMUST00000167992ENSMUST00000169034ENSMUSG00000039539ENSMUST00000118896ENSMUSG00000081316ENSMUST00000117720ENSMUSG00000081517ENSMUST00000117864ENSMUSG00000083125ENSMUST00000120023
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000078854 ENSDART00000054707 N/A N/A N/A 321.293±221.68 N/A N/A 24.283±10.71 14.854±0.00 0.525±0.00 N/A 5.742±0.00 N/A N/A N/A
ENSDARG00000090659 ENSDART00000130418 N/A N/A N/A 6.686±0.00 N/A N/A 0.075±0.00 N/A N/A N/A 0.246±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104723 ENST00000382020 1.219±0.00 0.453±0.00 N/A 2.057±0.62 0.629±0.33 1.256±0.00 1.019±0.22 1.331±0.00 1.074±0.00 1.270±0.03 0.063±0.00 2.365±1.23 4.445±0.00 1.367±0.00
ENST00000503191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503731 10.171±0.00 6.183±0.00 N/A 10.976±0.32 3.324±2.61 6.583±3.47 5.692±4.23 9.273±0.00 1.922±1.18 8.712±5.59 0.517±0.00 10.191±9.85 45.567±7.27 12.320±0.19
ENST00000506802 N/A N/A 1.277±0.00 N/A N/A 1.680±0.00 N/A 4.583±0.00 0.264±0.00 N/A N/A 0.389±0.00 18.019±6.45 4.513±0.00
ENST00000507316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.084±0.00 N/A N/A N/A
ENST00000507400 6.522±0.00 N/A N/A N/A 3.643±0.22 N/A 2.073±0.00 N/A N/A N/A 1.069±0.00 1.079±0.00 21.133±0.00 N/A
ENST00000508446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511783 3.790±0.00 N/A N/A 7.681±0.00 N/A N/A N/A 1.262±0.00 N/A 3.764±1.70 0.916±0.00 6.985±0.00 N/A N/A
ENST00000515859 3.546±0.00 2.208±0.00 N/A 6.853±2.69 1.143±0.42 5.575±0.00 4.213±0.00 2.505±2.13 N/A 3.865±0.00 N/A 8.547±4.81 23.266±4.29 8.116±0.00
ENSG00000185053 ENST00000382080 N/A 0.011±0.00 N/A N/A 0.021±0.00 N/A N/A N/A 0.108±0.10 N/A N/A 0.102±0.00 N/A 0.123±0.03
ENST00000421524 N/A N/A N/A 0.147±0.00 N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613692 N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A 0.050±0.00 N/A N/A N/A N/A
ENSG00000214366 ENST00000528228 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.053±0.00 N/A N/A 0.018±0.00
ENSG00000248423 ENST00000506768 N/A N/A 0.057±0.00 0.028±0.00 0.143±0.00 N/A N/A N/A 0.160±0.00 0.359±0.00 N/A N/A N/A N/A
ENSG00000255076 ENST00000532973 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 0.043±0.00 N/A N/A N/A N/A N/A
ENSG00000263415 ENST00000580600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A
ENSG00000274069 ENST00000622673 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 0.468±0.00 25.249±0.00 N/A 0.424±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039530 ENSMUST00000167992 22.958±15.09 38.893±12.64 42.023±15.74 64.139±21.11 19.426±5.35 37.080±9.37 7.748±0.87 22.886±10.74 12.774±9.36 31.239±17.71 1.820±0.36 57.806±23.63 15.329±6.19 27.551±19.33
ENSMUST00000169034 N/A 23.514±6.41 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039539 ENSMUST00000118896 N/A N/A 0.099±0.03 0.336±0.10 0.042±0.00 N/A N/A 0.061±0.05 0.040±0.03 N/A N/A 0.094±0.02 0.008±0.01 N/A
ENSMUST00000135764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081316 ENSMUST00000117720 N/A N/A 0.017±0.00 0.045±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A
ENSMUSG00000081517 ENSMUST00000117864 N/A N/A N/A 0.044±0.00 0.050±0.00 N/A 0.028±0.01 0.029±0.01 0.010±0.01 0.029±0.00 N/A 0.159±0.12 0.004±0.00 0.027±0.00
ENSMUSG00000083125 ENSMUST00000120023 0.095±0.00 N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A N/A 0.123±0.00 0.100±0.00 0.179±0.08

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