C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, zeta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185053 SGCZ 9606 - 8:14089864-15238339 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382080 SGCZ-001 14089864-15238339 protein_coding
  ENST00000421524 SGCZ-002 14090374-14554926 protein_coding
  ENST00000613692 SGCZ-201 14089865-14324209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryTestisENST00000382080ENST00000421524ENST00000613692
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000382080 0.011±0.00 N/A 0.021±0.00 N/A N/A 0.108±0.10 N/A 0.102±0.00 0.123±0.03
ENST00000421524 N/A 0.147±0.00 N/A 0.016±0.00 N/A N/A N/A N/A N/A
ENST00000613692 N/A N/A N/A N/A 0.166±0.00 N/A 0.050±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000459 CIL_000459_0001 CGP 8:13566843-15238339
CIL_00006V CIL_00006V_0002 CGP 8:14089864-15766649

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0016012 TAS:IEA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0046716 TAS muscle cell cellular homeostasis
GO:0055001 TAS muscle cell development
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090659 SGCZ sarcoglycan, zeta protein_coding Danio_rerio
ENSMUSG00000039539 Sgcz sarcoglycan zeta protein_coding Mus_musculus

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