C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan zeta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118896 Sgcz-001 ENSMUSG00000039539 10090 - 8:37522554-38661508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverOvaryPlacentaENSMUST00000118896
Transcript ID Bladder Brain Breast Kidney Liver Ovary Placenta
ENSMUST00000118896 0.099±0.03 0.336±0.10 0.042±0.00 0.061±0.05 0.040±0.03 0.094±0.02 0.008±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000459 CIL_000459_0002 CGP 8:36993575-38661508
CIL_00006V CIL_00006V_0003 CGP 8:37522298-39165112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0016012 IDA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382080 SGCZ-001 protein_coding Homo_sapiens 0 2497
ENST00000421524 SGCZ-002 protein_coding Homo_sapiens 0 819
ENST00000613692 SGCZ-201 protein_coding Homo_sapiens 0 1386

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