C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: neural cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114476 Ncam1-201 ENSMUSG00000039542 10090 - 9:49517506-49798922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114476
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114476 0.655±0.72 1.010±0.09 59.583±2.94 0.233±0.14 0.883±0.27 0.911±0.09 0.326±0.13 0.097±0.09 0.269±0.16 1.131±0.39 1.399±0.42 3.013±0.00 1.590±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000864 CIL_000864_0002 VISTA 9:49436439-50038292

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001928 IMP regulation of exocyst assembly
GO:0005515 IPI protein binding
GO:0005911 IDA cell-cell junction
GO:0007166 IDA cell surface receptor signaling pathway
GO:0009897 IDA external side of plasma membrane
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0031175 IGI neuron projection development
GO:0034109 IMP homotypic cell-cell adhesion
GO:0043025 IDA neuronal cell body
GO:0050850 IDA positive regulation of calcium-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316851 NCAM1-001 protein_coding Homo_sapiens 0 2723
ENST00000401611 NCAM1-008 protein_coding Homo_sapiens 0 2959
ENST00000524916 NCAM1-027 protein_coding Homo_sapiens 0 315
ENST00000525355 NCAM1-021 retained_intron Homo_sapiens 0 582
ENST00000525691 NCAM1-022 retained_intron Homo_sapiens 0 344
ENST00000525973 NCAM1-016 processed_transcript Homo_sapiens 0 582
ENST00000526322 NCAM1-009 protein_coding Homo_sapiens 0 501
ENST00000528590 NCAM1-012 protein_coding Homo_sapiens 0 416
ENST00000529356 NCAM1-005 protein_coding Homo_sapiens 0 1576
ENST00000530543 NCAM1-020 protein_coding Homo_sapiens 0 732
ENST00000531044 NCAM1-004 protein_coding Homo_sapiens 0 2861
ENST00000531817 NCAM1-010 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000533073 NCAM1-011 processed_transcript Homo_sapiens 0 758
ENST00000534046 NCAM1-019 retained_intron Homo_sapiens 0 479
ENST00000534516 NCAM1-023 retained_intron Homo_sapiens 0 399
ENST00000611284 NCAM1-007 processed_transcript Homo_sapiens 0 2591
ENST00000613217 NCAM1-018 protein_coding Homo_sapiens 0 483
ENST00000615112 NCAM1-201 protein_coding Homo_sapiens 0 2723
ENST00000615285 NCAM1-202 protein_coding Homo_sapiens 0 1576
ENST00000615525 NCAM1-028 processed_transcript Homo_sapiens 0 274
ENST00000617166 NCAM1-014 processed_transcript Homo_sapiens 0 274
ENST00000618266 NCAM1-203 protein_coding Homo_sapiens 0 2861
ENST00000619839 NCAM1-002 protein_coding Homo_sapiens 0 1576
ENST00000620046 NCAM1-015 protein_coding Homo_sapiens 0 416
ENST00000621128 NCAM1-003 protein_coding Homo_sapiens 0 2946
ENST00000621518 NCAM1-204 protein_coding Homo_sapiens 0 2459
ENST00000621850 NCAM1-006 protein_coding Homo_sapiens 0 2427

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