C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glutamate receptor ionotropic, NMDA3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039579 Grin3a 10090 - 4:49661611-49845744 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076674 Grin3a-002 49661611-49845549 protein_coding
  ENSMUST00000093859 Grin3a-001 49661611-49845549 protein_coding
  ENSMUST00000131797 Grin3a-003 49769635-49845744 processed_transcript
  ENSMUST00000149059 Grin3a-004 49704204-49719250 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076674ENSMUST00000093859ENSMUST00000131797ENSMUST00000149059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076674 0.135±0.07 0.050±0.03 0.036±0.00 3.240±1.53 0.125±0.06 0.611±0.18 0.078±0.02 0.090±0.02 0.020±0.02 0.063±0.02 0.006±0.00 0.171±0.10 0.034±0.01 0.082±0.03
ENSMUST00000093859 N/A 0.002±0.00 N/A 1.145±0.00 N/A N/A N/A N/A 0.008±0.01 0.123±0.00 0.002±0.00 0.080±0.04 N/A 0.081±0.00
ENSMUST00000131797 N/A 0.048±0.04 N/A 0.743±0.00 0.053±0.01 0.415±0.13 N/A 0.049±0.00 N/A N/A 0.007±0.00 0.126±0.04 0.014±0.00 N/A
ENSMUST00000149059 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744
CIL_0001QI CIL_0001QI_0002 CGP 4:49661611-49845744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004972 IMP N-methyl-D-aspartate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005262 IMP calcium channel activity
GO:0005515 IPI protein binding
GO:0006816 IMP calcium ion transport
GO:0016358 IMP dendrite development
GO:0016594 IEA glycine binding
GO:0017146 IBA N-methyl-D-aspartate selective glutamate receptor complex
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0034220 IBA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042165 IEA neurotransmitter binding
GO:0042802 IEA identical protein binding
GO:0043005 IEA neuron projection
GO:0043025 IDA neuronal cell body
GO:0045202 IEA synapse
GO:0045211 IDA postsynaptic membrane
GO:0045471 IEA response to ethanol
GO:0048511 IEA rhythmic process
GO:0051721 IEA protein phosphatase 2A binding
GO:0060134 IMP prepulse inhibition
GO:0070588 IMP calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075802 GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A protein_coding Danio_rerio
ENSG00000198785 GRIN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A protein_coding Homo_sapiens

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