C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00034Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155827-ENSG00000198785 CGP 9606 9:101533851-101738580
GeneTranscriptPositionBiotype
ENSG00000155827 (RNF20)
ring finger protein 20, E3 ubiquitin protein ligase 		ENST00000374819 (RNF20-007) 101533888-101540890 protein_coding
ENST00000389120 (RNF20-001) 101533851-101563344 protein_coding
ENST00000466817 (RNF20-006) 101533979-101540628 protein_coding
ENST00000478072 (RNF20-008) 101560681-101561452 retained_intron
ENST00000479306 (RNF20-004) 101533905-101540370 protein_coding
ENST00000481046 (RNF20-005) 101533958-101540279 processed_transcript
ENSG00000188386 (PPP3R2)
protein phosphatase 3, regulatory subunit B, beta 		ENST00000374806 (PPP3R2-001) 101591615-101595001 protein_coding
ENSG00000198785 (GRIN3A)
glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 		ENST00000361820 (GRIN3A-001) 101569353-101738580 protein_coding
ENST00000479772 (GRIN3A-002) 101600849-101613522 processed_transcript
CIL_00034Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028309-ENSMUSG00000039579 CGP 10090 4:49632006-49845744
GeneTranscriptPositionBiotype
ENSMUSG00000028309 (Rnf20)
ring finger protein 20 		ENSMUST00000029989 (Rnf20-001) 49632066-49656887 protein_coding
ENSMUST00000126675 (Rnf20-003) 49632159-49642959 processed_transcript
ENSMUST00000131962 (Rnf20-008) 49650263-49652826 processed_transcript
ENSMUST00000132782 (Rnf20-004) 49632137-49640013 processed_transcript
ENSMUST00000138490 (Rnf20-009) 49650968-49652550 processed_transcript
ENSMUST00000140341 (Rnf20-006) 49632006-49638702 protein_coding
ENSMUST00000146547 (Rnf20-005) 49632093-49644539 protein_coding
ENSMUST00000149862 (Rnf20-007) 49641718-49648439 processed_transcript
ENSMUST00000156314 (Rnf20-002) 49632060-49650251 protein_coding
ENSMUST00000167496 (Rnf20-201) 49632060-49656886 protein_coding
ENSMUSG00000028310 (Ppp3r2)
protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) 		ENSMUST00000029991 (Ppp3r2-001) 49678747-49682024 protein_coding
ENSMUSG00000039579 (Grin3a)
glutamate receptor ionotropic, NMDA3A 		ENSMUST00000076674 (Grin3a-002) 49661611-49845549 protein_coding
ENSMUST00000093859 (Grin3a-001) 49661611-49845549 protein_coding
ENSMUST00000131797 (Grin3a-003) 49769635-49845744 processed_transcript
ENSMUST00000149059 (Grin3a-004) 49704204-49719250 processed_transcript
ENSMUSG00000083153 (Gm12459)
predicted gene 12459 		ENSMUST00000120659 (Gm12459-001) 49746731-49747246 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00034Z_0001ENSG00000155827ENST00000374819ENST00000389120ENST00000466817ENST00000478072ENST00000479306ENST00000481046ENSG00000188386ENST00000374806ENSG00000198785ENST00000361820ENST00000479772CIL_00034Z_0002ENSMUSG00000028309ENSMUST00000029989ENSMUST00000126675ENSMUST00000131962ENSMUST00000132782ENSMUST00000138490ENSMUST00000140341ENSMUST00000146547ENSMUST00000149862ENSMUST00000156314ENSMUST00000167496ENSMUSG00000028310ENSMUST00000029991ENSMUSG00000039579ENSMUST00000076674ENSMUST00000093859ENSMUST00000131797ENSMUST00000149059ENSMUSG00000083153ENSMUST00000120659
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00034Z_0001ENSG00000155827ENST00000374819ENST00000389120ENSG00000188386ENST00000374806ENSG00000198785ENST00000361820ENST00000479772CIL_00034Z_0002ENSMUSG00000028309ENSMUST00000029989ENSMUST00000131962ENSMUST00000146547ENSMUST00000156314ENSMUST00000167496ENSMUSG00000028310ENSMUST00000029991ENSMUSG00000039579ENSMUST00000076674ENSMUST00000093859ENSMUST00000131797ENSMUST00000149059ENSMUSG00000083153ENSMUST00000120659
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155827 ENST00000374819 N/A N/A N/A N/A N/A 4.417±0.00 N/A 3.922±0.00 N/A N/A N/A 5.868±0.00 N/A N/A
ENST00000389120 10.234±0.00 6.176±0.00 2.840±0.00 7.889±4.08 6.909±5.43 8.217±5.58 5.388±4.50 5.830±5.38 4.799±1.53 3.857±0.09 9.235±8.59 9.893±5.42 7.850±3.03 24.685±3.64
ENST00000466817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188386 ENST00000374806 N/A N/A N/A N/A 0.017±0.00 N/A N/A 0.056±0.00 N/A N/A N/A 0.008±0.00 0.010±0.00 27.682±7.57
ENSG00000198785 ENST00000361820 0.065±0.00 0.283±0.00 0.035±0.00 1.490±0.02 0.143±0.08 0.094±0.07 0.153±0.10 0.053±0.00 0.083±0.00 0.033±0.02 0.019±0.01 0.091±0.05 0.041±0.02 0.890±0.00
ENST00000479772 N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028309 ENSMUST00000029989 4.950±0.45 2.442±0.67 8.396±0.79 11.474±1.38 4.895±1.74 2.283±0.40 3.847±0.68 3.719±0.62 3.907±1.75 7.629±2.56 3.801±0.72 7.792±3.85 9.809±3.18 4.776±1.00
ENSMUST00000126675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131962 N/A N/A N/A 43.773±0.00 N/A N/A N/A N/A N/A N/A N/A 85.032±0.00 35.093±7.63 N/A
ENSMUST00000132782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146547 10.959±0.00 20.461±5.71 N/A N/A 12.383±2.22 11.807±2.85 5.962±0.00 8.800±1.97 5.871±2.13 16.282±2.95 N/A 16.189±3.18 N/A 7.133±0.00
ENSMUST00000149862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156314 4.223±1.15 3.305±1.08 N/A 15.594±0.00 5.413±2.53 4.884±1.58 2.175±0.49 1.951±0.34 N/A 4.975±1.40 N/A 7.656±6.43 12.247±3.81 1.627±0.00
ENSMUST00000167496 2.948±1.41 3.711±1.72 3.678±1.46 8.522±1.62 N/A 2.470±0.00 N/A 2.257±0.32 3.716±2.37 2.033±0.00 1.205±0.45 3.384±0.00 3.538±0.51 1.108±0.00
ENSMUSG00000028310 ENSMUST00000029991 N/A N/A 0.002±0.00 0.077±0.04 N/A 0.056±0.02 0.010±0.00 0.017±0.01 0.008±0.01 0.036±0.01 N/A 0.007±0.00 0.003±0.00 79.692±26.97
ENSMUSG00000039579 ENSMUST00000076674 0.135±0.07 0.050±0.03 0.036±0.00 3.240±1.53 0.125±0.06 0.611±0.18 0.078±0.02 0.090±0.02 0.020±0.02 0.063±0.02 0.006±0.00 0.171±0.10 0.034±0.01 0.082±0.03
ENSMUST00000093859 N/A 0.002±0.00 N/A 1.145±0.00 N/A N/A N/A N/A 0.008±0.01 0.123±0.00 0.002±0.00 0.080±0.04 N/A 0.081±0.00
ENSMUST00000131797 N/A 0.048±0.04 N/A 0.743±0.00 0.053±0.01 0.415±0.13 N/A 0.049±0.00 N/A N/A 0.007±0.00 0.126±0.04 0.014±0.00 N/A
ENSMUST00000149059 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.008±0.00
ENSMUSG00000083153 ENSMUST00000120659 N/A N/A N/A 0.204±0.14 N/A 0.343±0.00 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00

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