C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor ionotropic, NMDA3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076674 Grin3a-002 ENSMUSG00000039579 10090 - 4:49661611-49845549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076674 0.135±0.07 0.050±0.03 0.036±0.00 3.240±1.53 0.125±0.06 0.611±0.18 0.078±0.02 0.090±0.02 0.020±0.02 0.063±0.02 0.006±0.00 0.171±0.10 0.034±0.01 0.082±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Z CIL_00034Z_0002 CGP 4:49632006-49845744
CIL_0001QI CIL_0001QI_0002 CGP 4:49661611-49845744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004972 IMP N-methyl-D-aspartate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005262 IMP calcium channel activity
GO:0005515 IPI protein binding
GO:0006816 IMP calcium ion transport
GO:0016358 IMP dendrite development
GO:0017146 IBA N-methyl-D-aspartate selective glutamate receptor complex
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0034220 IBA ion transmembrane transport
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0043025 IDA neuronal cell body
GO:0045211 IDA postsynaptic membrane
GO:0060134 IMP prepulse inhibition
GO:0070588 IMP calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361820 GRIN3A-001 protein_coding Homo_sapiens 0 4447

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