C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: predicted pseudogene 5422
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039684 Gm5422 10090 + 10:31248140-31251045 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050717 Gm5422-201 31248140-31251045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050717 0.504±0.05 0.180±0.05 0.186±0.17 0.470±0.31 0.203±0.06 0.146±0.09 0.282±0.05 0.154±0.04 0.158±0.19 0.134±0.03 0.025±0.01 0.652±0.52 0.038±0.02 0.435±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OG CIL_0008OG_0002 VISTA 10:30697657-31298999
CIL_0008OH CIL_0008OH_0002 VISTA 10:30727819-31328728
CIL_0008OI CIL_0008OI_0002 VISTA 10:30734051-31335579
CIL_0008OD CIL_0008OD_0002 VISTA 10:30753081-31354088
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087758 PSMD2 (1 of 2) proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein_coding Danio_rerio
ENSDARG00000088574 psmd2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein_coding Danio_rerio
ENSG00000175166 PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein_coding Homo_sapiens

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