C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5422
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050717 Gm5422-201 ENSMUSG00000039684 10090 + 10:31248140-31251045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050717 0.504±0.05 0.180±0.05 0.186±0.17 0.470±0.31 0.203±0.06 0.146±0.09 0.282±0.05 0.154±0.04 0.158±0.19 0.134±0.03 0.025±0.01 0.652±0.52 0.038±0.02 0.435±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OG CIL_0008OG_0002 VISTA 10:30697657-31298999
CIL_0008OH CIL_0008OH_0002 VISTA 10:30727819-31328728
CIL_0008OI CIL_0008OI_0002 VISTA 10:30734051-31335579
CIL_0008OD CIL_0008OD_0002 VISTA 10:30753081-31354088
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310118 PSMD2-001 protein_coding Homo_sapiens 0 3384
ENST00000417952 PSMD2-004 protein_coding Homo_sapiens 0 520
ENST00000432855 PSMD2-017 protein_coding Homo_sapiens 0 414
ENST00000433010 PSMD2-008 nonsense_mediated_decay Homo_sapiens 0 730
ENST00000435761 PSMD2-002 protein_coding Homo_sapiens 0 2944
ENST00000439383 PSMD2-003 protein_coding Homo_sapiens 0 3031
ENST00000445558 PSMD2-010 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000451892 RP11-567G24.1-001 processed_pseudogene Homo_sapiens 0 2985
ENST00000459910 PSMD2-005 processed_transcript Homo_sapiens 0 523
ENST00000460628 PSMD2-014 retained_intron Homo_sapiens 0 549
ENST00000466987 PSMD2-015 retained_intron Homo_sapiens 0 237
ENST00000473991 PSMD2-019 processed_transcript Homo_sapiens 0 734
ENST00000476461 PSMD2-009 retained_intron Homo_sapiens 0 313
ENST00000487475 PSMD2-006 retained_intron Homo_sapiens 0 520
ENST00000491149 PSMD2-013 retained_intron Homo_sapiens 0 697
ENST00000492191 PSMD2-007 retained_intron Homo_sapiens 0 355
ENST00000496925 PSMD2-018 retained_intron Homo_sapiens 0 730

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