C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056442 Slc6a5-201 ENSMUSG00000039728 10090 + 7:49910146-49963856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000056442
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000056442 0.595±0.00 1.212±1.54 0.010±0.00 0.006±0.00 0.005±0.00 0.005±0.00 0.006±0.00 0.017±0.01 0.004±0.00 0.013±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AR CIL_0004AR_0003 CGP 7:49778346-49963856
CIL_00043M CIL_00043M_0002 CGP 7:49910146-50865255

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 IEA plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015375 IEA glycine:sodium symporter activity
GO:0016021 IEA integral component of membrane
GO:0036233 IEA glycine import
GO:0055085 IEA transmembrane transport
GO:0060012 IEA synaptic transmission, glycinergic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298923 SLC6A5-002 nonsense_mediated_decay Homo_sapiens 0 2272
ENST00000525748 SLC6A5-001 protein_coding Homo_sapiens 0 3212
ENST00000528440 SLC6A5-003 processed_transcript Homo_sapiens 0 1275

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