C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039831 Arhgap29 10090 + 3:121953229-122016677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037958 Arhgap29-001 121953229-122016677 protein_coding
  ENSMUST00000127177 Arhgap29-007 121953316-122015005 nonsense_mediated_decay
  ENSMUST00000127466 Arhgap29-009 122002989-122005799 retained_intron
  ENSMUST00000128366 Arhgap29-008 121953231-121988915 protein_coding
  ENSMUST00000137089 Arhgap29-002 121967830-122009914 protein_coding
  ENSMUST00000137205 Arhgap29-004 121981543-121992892 retained_intron
  ENSMUST00000141267 Arhgap29-006 121993632-122016154 protein_coding
  ENSMUST00000150478 Arhgap29-005 121988869-121992566 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037958ENSMUST00000127177ENSMUST00000137089ENSMUST00000141267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037958 N/A 1.313±0.11 1.662±0.21 0.797±0.13 N/A 0.942±0.00 1.546±0.00 1.886±0.53 0.570±0.27 4.489±0.05 0.888±0.18 5.465±0.42 3.793±1.13 9.720±0.84
ENSMUST00000127177 10.220±2.11 2.282±0.11 N/A 1.438±0.00 6.986±1.54 1.301±0.31 4.158±0.55 3.392±0.66 2.809±0.76 10.056±1.57 N/A 7.788±1.49 5.384±0.00 20.799±2.65
ENSMUST00000137089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.320±0.37 17.316±0.52 10.394±5.38 N/A
ENSMUST00000141267 37.148±6.01 14.101±3.49 5.519±0.57 3.399±0.23 21.637±5.63 6.949±1.11 11.598±0.69 17.330±4.70 6.818±4.07 45.448±2.64 2.177±0.70 49.535±11.60 16.801±7.92 24.560±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0005PB CIL_0005PB_0003 CGP 3:121953229-122180061

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0030165 ISO PDZ domain binding
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017748 arhgap29b Rho GTPase activating protein 29b protein_coding Danio_rerio
ENSDARG00000026329 arhgap29a Rho GTPase activating protein 29a protein_coding Danio_rerio
ENSG00000137962 ARHGAP29 Rho GTPase activating protein 29 protein_coding Homo_sapiens

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