C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 60, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054080 Fam60a-001 ENSMUSG00000039985 10090 - 6:148921035-148946467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054080
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054080 2.180±1.19 8.764±1.42 12.165±8.85 0.958±0.48 1.384±0.34 0.652±0.08 1.591±0.55 3.983±3.42 1.803±0.47 0.399±0.15 5.300±4.29 8.718±6.28 1.226±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062C CIL_00062C_0002 CGP 6:148842492-148946467
CIL_0003DK CIL_0003DK_0003 CGP 6:148921035-149101680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016580 ISS Sin3 complex
GO:0030336 ISS negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337682 FAM60A-001 protein_coding Homo_sapiens 0 1077
ENST00000448582 FAM60A-003 retained_intron Homo_sapiens 0 1005
ENST00000454658 FAM60A-004 protein_coding Homo_sapiens 0 1007
ENST00000539004 FAM60A-006 protein_coding Homo_sapiens 0 612
ENST00000539409 FAM60A-002 protein_coding Homo_sapiens 0 586
ENST00000542983 FAM60A-007 protein_coding Homo_sapiens 0 789
ENST00000543615 FAM60A-008 protein_coding Homo_sapiens 0 586
ENST00000544921 FAM60A-009 nonsense_mediated_decay Homo_sapiens 0 787
ENST00000547032 RP11-718L23.1-001 processed_pseudogene Homo_sapiens 0 414
ENST00000578364 FAM60BP-001 processed_pseudogene Homo_sapiens 0 846
ENST00000591086 FAM60CP-001 processed_pseudogene Homo_sapiens 0 909
ENST00000617411 FAM60A-201 protein_coding Homo_sapiens 0 1077

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