C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, alpha2/delta subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180204 Cacna2d1-206 ENSMUSG00000040118 10090 + 5:15934691-16374511 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryENSMUST00000180204
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000180204 8.087±3.72 5.201±2.52 3.574±1.61 1.205±0.13 0.779±0.27 5.107±1.62 0.687±0.00 0.042±0.01 0.880±0.00 4.629±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z1 CIL_0008Z1_0002 VISTA 5:15666035-16267426
CIL_0003CV CIL_0003CV_0002 CGP 5:15934691-16619439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0051924 IMP regulation of calcium ion transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356253 CACNA2D1-201 protein_coding Homo_sapiens 0 2159
ENST00000356860 CACNA2D1-001 protein_coding Homo_sapiens 0 5494
ENST00000423588 CACNA2D1-002 protein_coding Homo_sapiens 0 1197
ENST00000443883 CACNA2D1-005 protein_coding Homo_sapiens 0 845
ENST00000461275 CACNA2D1-011 processed_transcript Homo_sapiens 0 379
ENST00000464354 CACNA2D1-004 processed_transcript Homo_sapiens 0 684
ENST00000466806 CACNA2D1-006 retained_intron Homo_sapiens 0 401
ENST00000475237 CACNA2D1-010 retained_intron Homo_sapiens 0 532
ENST00000484706 CACNA2D1-003 processed_transcript Homo_sapiens 0 440
ENST00000486539 CACNA2D1-008 retained_intron Homo_sapiens 1e-39 167
ENST00000492734 CACNA2D1-007 retained_intron Homo_sapiens 0 608

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