C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008Z1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2419 VISTA 9606 7:82110305-82711792
GeneTranscriptPositionBiotype
ENSG00000153956 (CACNA2D1)
calcium channel, voltage-dependent, alpha 2/delta subunit 1 		ENST00000356253 (CACNA2D1-201) 81950102-82443715 protein_coding
ENST00000356860 (CACNA2D1-001) 81946444-82443798 protein_coding
ENST00000423588 (CACNA2D1-002) 82050336-82443716 protein_coding
ENST00000443883 (CACNA2D1-005) 81969881-82005790 protein_coding
ENST00000461275 (CACNA2D1-011) 82050935-82084836 processed_transcript
ENST00000464354 (CACNA2D1-004) 82005447-82033072 processed_transcript
ENST00000466806 (CACNA2D1-006) 82005331-82012251 retained_intron
ENST00000469297 (CACNA2D1-009) 81961894-81964282 retained_intron
ENST00000475237 (CACNA2D1-010) 82007662-82032901 retained_intron
ENST00000484706 (CACNA2D1-003) 82117044-82343236 processed_transcript
ENST00000486539 (CACNA2D1-008) 81967165-81971089 retained_intron
ENST00000492734 (CACNA2D1-007) 82012043-82038235 retained_intron
ENSG00000213530 (MTHFD2P5)
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 5 		ENST00000320415 (MTHFD2P5-001) 82589848-82590691 processed_pseudogene
ENSG00000228711 (AC004006.2)
 ENST00000434994 (AC004006.2-001) 82657035-82657411 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008Z1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2419 VISTA 10090 5:15666035-16267426
GeneTranscriptPositionBiotype
ENSMUSG00000040118 (Cacna2d1)
calcium channel, voltage-dependent, alpha2/delta subunit 1 		ENSMUST00000039370 (Cacna2d1-201) 15934691-16374511 protein_coding
ENSMUST00000078272 (Cacna2d1-202) 15934691-16374511 protein_coding
ENSMUST00000101581 (Cacna2d1-203) 15934691-16374511 protein_coding
ENSMUST00000115281 (Cacna2d1-204) 15934829-16370727 protein_coding
ENSMUST00000167946 (Cacna2d1-205) 15934691-16374511 protein_coding
ENSMUST00000180204 (Cacna2d1-206) 15934691-16374511 protein_coding
ENSMUSG00000073208 (Speer4c)
spermatogenesis associated glutamate (E)-rich protein 4c 		ENSMUST00000095005 (Speer4c-001) 15709501-15714236 protein_coding
ENSMUST00000179506 (Speer4c-201) 15711557-15714271 protein_coding
ENSMUSG00000089871 (Speer7-ps1)
spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1 		ENSMUST00000162113 (Speer7-ps1-001) 15680710-15714596 processed_transcript
ENSMUSG00000096936 (Gm3510)
predicted gene 3510 		ENSMUST00000180447 (Gm3510-201) 15923755-15933406 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Z1_0001ENSG00000153956ENST00000356253ENST00000356860ENST00000423588ENST00000443883ENST00000461275ENST00000464354ENST00000466806ENST00000469297ENST00000475237ENST00000484706ENST00000486539ENST00000492734ENSG00000213530ENST00000320415ENSG00000228711ENST00000434994CIL_0008Z1_0002ENSMUSG00000040118ENSMUST00000039370ENSMUST00000078272ENSMUST00000101581ENSMUST00000115281ENSMUST00000167946ENSMUST00000180204ENSMUSG00000073208ENSMUST00000095005ENSMUST00000179506ENSMUSG00000089871ENSMUST00000162113ENSMUSG00000096936ENSMUST00000180447
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Z1_0001ENSG00000153956ENST00000356253ENST00000356860ENST00000423588ENST00000443883ENSG00000213530ENST00000320415ENSG00000228711ENST00000434994CIL_0008Z1_0002ENSMUSG00000040118ENSMUST00000039370ENSMUST00000078272ENSMUST00000101581ENSMUST00000115281ENSMUST00000180204ENSMUSG00000073208ENSMUST00000095005ENSMUST00000179506ENSMUSG00000089871ENSMUST00000162113ENSMUSG00000096936ENSMUST00000180447
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153956 ENST00000356253 N/A N/A N/A 2.539±0.00 N/A N/A N/A N/A 1.823±0.00 N/A 10.408±0.00 N/A N/A N/A
ENST00000356860 1.290±0.00 N/A N/A 6.453±1.29 7.174±5.81 2.119±0.85 1.485±0.00 0.782±0.52 0.483±0.34 0.445±0.00 N/A 0.671±0.38 0.205±0.00 0.334±0.00
ENST00000423588 N/A N/A N/A N/A N/A N/A 4.622±0.00 N/A 7.873±0.00 N/A 16.667±0.00 N/A N/A N/A
ENST00000443883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A
ENST00000461275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213530 ENST00000320415 N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A
ENSG00000228711 ENST00000434994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040118 ENSMUST00000039370 N/A 2.718±0.00 N/A N/A 6.482±0.56 N/A N/A N/A N/A 1.163±0.00 40.372±6.22 N/A N/A N/A
ENSMUST00000078272 2.208±1.45 7.643±1.81 6.332±0.00 N/A 1.024±0.09 0.983±0.26 N/A 0.370±0.03 0.083±0.05 2.555±0.31 N/A 3.687±0.72 0.085±0.05 0.117±0.01
ENSMUST00000101581 N/A N/A N/A 15.970±2.43 0.688±0.00 0.674±0.20 2.028±0.00 0.704±0.00 0.008±0.00 N/A N/A N/A N/A N/A
ENSMUST00000115281 3.189±0.27 10.492±4.17 N/A 18.802±0.00 0.385±0.00 1.142±0.55 N/A N/A 0.052±0.03 0.748±0.00 N/A 3.325±0.99 0.157±0.08 0.719±0.25
ENSMUST00000167946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180204 N/A 8.087±3.72 5.201±2.52 3.574±1.61 1.205±0.13 0.779±0.27 5.107±1.62 0.687±0.00 0.042±0.01 0.880±0.00 N/A 4.629±1.25 N/A N/A
ENSMUSG00000073208 ENSMUST00000095005 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.849±0.26
ENSMUST00000179506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.625±1.66
ENSMUSG00000089871 ENSMUST00000162113 0.613±0.48 0.358±0.23 1.567±0.05 0.415±0.16 1.205±0.48 1.028±0.57 0.049±0.02 0.076±0.04 0.019±0.01 N/A N/A 8.336±4.88 0.401±0.21 2.475±0.36
ENSMUSG00000096936 ENSMUST00000180447 0.037±0.00 0.135±0.00 0.020±0.01 1.008±0.37 0.034±0.00 N/A 0.124±0.06 N/A 0.006±0.00 N/A 0.020±0.01 0.053±0.04 0.018±0.00 0.048±0.00

Loading