C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 1-aminocyclopropane-1-carboxylate synthase (non-functional)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040272 Accs 10090 - 2:93833467-93849943 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041593 Accs-002 93835438-93849799 protein_coding
  ENSMUST00000068513 Accs-003 93835438-93849679 protein_coding
  ENSMUST00000111246 Accs-001 93833467-93849941 protein_coding
  ENSMUST00000128719 Accs-010 93839193-93842268 retained_intron
  ENSMUST00000130077 Accs-007 93842569-93849816 protein_coding
  ENSMUST00000140018 Accs-009 93841280-93842381 retained_intron
  ENSMUST00000141413 Accs-006 93842809-93849939 retained_intron
  ENSMUST00000146045 Accs-011 93835988-93839359 retained_intron
  ENSMUST00000146436 Accs-004 93837019-93849943 retained_intron
  ENSMUST00000148268 Accs-012 93845021-93845784 processed_transcript
  ENSMUST00000149073 Accs-005 93842798-93849939 retained_intron
  ENSMUST00000150666 Accs-008 93838011-93847929 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041593ENSMUST00000068513ENSMUST00000111246ENSMUST00000130077ENSMUST00000146045ENSMUST00000146436ENSMUST00000149073ENSMUST00000150666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041593 2.567±0.98 1.820±0.26 1.066±0.00 N/A 1.520±0.40 1.138±0.31 1.738±0.61 2.296±0.56 0.734±0.25 1.507±0.12 0.408±0.13 2.362±0.86 0.709±0.00 0.269±0.09
ENSMUST00000068513 2.668±0.27 N/A 2.150±0.53 1.394±1.03 2.450±0.16 1.128±0.33 1.137±0.40 1.812±0.55 0.832±0.36 2.060±0.40 0.657±0.14 2.226±0.73 0.918±0.44 0.294±0.15
ENSMUST00000111246 1.417±0.40 0.647±0.19 1.245±0.21 1.312±0.63 0.881±0.12 0.388±0.03 0.478±0.19 0.896±0.30 0.417±0.11 1.442±0.01 0.269±0.01 1.175±0.28 0.351±0.06 0.092±0.05
ENSMUST00000130077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00
ENSMUST00000146045 N/A 4.771±0.99 N/A N/A 3.986±0.43 2.768±0.79 N/A N/A 1.855±0.00 3.684±0.35 N/A 5.212±0.86 N/A N/A
ENSMUST00000146436 0.804±0.34 0.392±0.00 N/A 0.450±0.36 0.733±0.12 0.436±0.05 N/A 0.476±0.00 0.186±0.04 0.824±0.00 0.107±0.02 1.033±0.28 0.210±0.12 0.025±0.00
ENSMUST00000149073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.730±0.00 N/A N/A N/A
ENSMUST00000150666 N/A N/A N/A N/A 3.954±0.75 3.030±0.00 N/A N/A 1.549±0.00 N/A 0.477±0.00 4.451±0.63 N/A 0.424±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UN CIL_0008UN_0002 VISTA 2:93370139-93973617

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0009058 IEA biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052124 accs 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) protein_coding Danio_rerio
ENSG00000110455 ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) protein_coding Homo_sapiens

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