C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045923 Limd2-001 ENSMUSG00000040699 10090 - 11:106156256-106160142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045923
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045923 9.380±0.00 19.210±7.38 7.279±3.99 42.664±23.12 7.786±1.00 2.408±0.63 9.872±1.37 9.618±5.70 12.749±0.00 0.540±0.34 15.546±8.91 11.340±11.82 36.086±16.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0003AI CIL_0003AI_0003 CGP 11:106084613-106160860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259006 LIMD2-001 protein_coding Homo_sapiens 0 658
ENST00000361357 MAP3K3-001 protein_coding Homo_sapiens 0 211
ENST00000578061 LIMD2-011 protein_coding Homo_sapiens 0 496
ENST00000578067 LIMD2-004 retained_intron Homo_sapiens 0 507
ENST00000578297 LIMD2-012 retained_intron Homo_sapiens 0 387
ENST00000578402 LIMD2-002 protein_coding Homo_sapiens 0 617
ENST00000578993 LIMD2-010 protein_coding Homo_sapiens 0 224
ENST00000579329 LIMD2-005 retained_intron Homo_sapiens 0 202
ENST00000579814 LIMD2-008 retained_intron Homo_sapiens 0 387
ENST00000580222 LIMD2-009 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000582055 LIMD2-006 protein_coding Homo_sapiens 0 422
ENST00000583211 LIMD2-003 protein_coding Homo_sapiens 0 544
ENST00000584645 LIMD2-007 protein_coding Homo_sapiens 0 399

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