C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor protein complex AP-1, gamma 2 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040701 Ap1g2 10090 - 14:55098578-55106593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036041 Ap1g2-001 55098850-55106593 protein_coding
  ENSMUST00000127870 Ap1g2-002 55098850-55106548 nonsense_mediated_decay
  ENSMUST00000131323 Ap1g2-004 55098850-55106267 nonsense_mediated_decay
  ENSMUST00000133004 Ap1g2-005 55099054-55106132 processed_transcript
  ENSMUST00000137481 Ap1g2-006 55105706-55106561 retained_intron
  ENSMUST00000137548 Ap1g2-008 55102350-55104510 retained_intron
  ENSMUST00000139536 Ap1g2-010 55098850-55099388 retained_intron
  ENSMUST00000144197 Ap1g2-007 55105925-55106508 processed_transcript
  ENSMUST00000151314 Ap1g2-003 55098578-55106534 nonsense_mediated_decay
  ENSMUST00000153326 Ap1g2-009 55100435-55100787 retained_intron
  ENSMUST00000153702 Ap1g2-011 55102633-55104891 retained_intron
  ENSMUST00000170285 Ap1g2-201 55098855-55106147 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000036041ENSMUST00000127870ENSMUST00000133004ENSMUST00000151314ENSMUST00000170285
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000036041 8.248±1.04 N/A 4.890±0.86 7.007±1.77 15.524±4.84 1.181±0.00 5.442±0.64 6.484±4.65 4.436±1.12 N/A 6.614±1.79 4.299±2.15
ENSMUST00000127870 N/A N/A N/A N/A 9.491±0.00 N/A N/A N/A 2.862±0.00 N/A 5.717±2.48 0.980±0.00
ENSMUST00000133004 N/A N/A N/A 2.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151314 4.393±0.29 4.143±0.27 4.882±0.01 6.015±1.52 10.306±0.75 1.617±0.67 3.970±0.47 2.259±1.22 3.917±0.12 2.658±0.32 6.339±1.81 2.842±0.58
ENSMUST00000170285 N/A 6.858±1.37 N/A 10.004±3.20 12.334±2.21 1.314±0.12 2.821±0.00 2.454±0.69 N/A N/A 4.979±1.74 3.681±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003BV CIL_0003BV_0002 CGP 14:55098578-55116935

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005798 ISS Golgi-associated vesicle
GO:0005802 TAS trans-Golgi network
GO:0006886 TAS intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0016020 ISS membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030131 IEA clathrin adaptor complex
GO:0030133 ISS transport vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054337 ap1g2 adaptor-related protein complex 1, gamma 2 subunit protein_coding Danio_rerio
ENSG00000213983 AP1G2 adaptor-related protein complex 1, gamma 2 subunit protein_coding Homo_sapiens

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