C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor protein complex AP-1, gamma 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151314 Ap1g2-003 ENSMUSG00000040701 10090 - 14:55098578-55106534 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000151314
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000151314 4.393±0.29 4.143±0.27 4.882±0.01 6.015±1.52 10.306±0.75 1.617±0.67 3.970±0.47 2.259±1.22 3.917±0.12 2.658±0.32 6.339±1.81 2.842±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003BV CIL_0003BV_0002 CGP 14:55098578-55116935

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005802 TAS trans-Golgi network
GO:0006886 TAS intracellular protein transport
GO:0016192 TAS vesicle-mediated transport
GO:0030117 IEA membrane coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308724 AP1G2-002 protein_coding Homo_sapiens 0 1131
ENST00000397120 AP1G2-003 protein_coding Homo_sapiens 0 1131
ENST00000460049 AP1G2-001 retained_intron Homo_sapiens 0 763
ENST00000465445 AP1G2-005 retained_intron Homo_sapiens 0 654
ENST00000535852 AP1G2-011 retained_intron Homo_sapiens 0 1131
ENST00000553629 AP1G2-006 retained_intron Homo_sapiens 0 785
ENST00000553685 AP1G2-029 retained_intron Homo_sapiens 0 285
ENST00000553756 AP1G2-031 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000554069 AP1G2-034 retained_intron Homo_sapiens 0 787
ENST00000554554 AP1G2-014 retained_intron Homo_sapiens 0 364
ENST00000554816 AP1G2-033 retained_intron Homo_sapiens 0 274
ENST00000554977 AP1G2-028 retained_intron Homo_sapiens 0 470
ENST00000554982 AP1G2-027 retained_intron Homo_sapiens 0 252
ENST00000555118 AP1G2-025 processed_transcript Homo_sapiens 0 355
ENST00000555510 AP1G2-023 processed_transcript Homo_sapiens 0 209
ENST00000555789 AP1G2-019 retained_intron Homo_sapiens 0 219
ENST00000555896 AP1G2-008 retained_intron Homo_sapiens 0 287
ENST00000555974 AP1G2-026 retained_intron Homo_sapiens 0 233
ENST00000556277 AP1G2-035 processed_transcript Homo_sapiens 0 1035
ENST00000556741 AP1G2-020 retained_intron Homo_sapiens 0 302
ENST00000556743 AP1G2-007 retained_intron Homo_sapiens 0 285
ENST00000556843 AP1G2-032 protein_coding Homo_sapiens 0 595
ENST00000556943 AP1G2-037 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000556966 AP1G2-022 retained_intron Homo_sapiens 0 424
ENST00000557132 AP1G2-018 retained_intron Homo_sapiens 5e-30 137
ENST00000557162 AP1G2-013 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000557189 AP1G2-036 protein_coding Homo_sapiens 0 798
ENST00000557482 AP1G2-010 retained_intron Homo_sapiens 0 784
ENST00000557619 AP1G2-030 retained_intron Homo_sapiens 0 285

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