C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor protein complex AP-1, gamma 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170285 Ap1g2-201 ENSMUSG00000040701 10090 - 14:55098855-55106147 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000170285
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000170285 6.858±1.37 10.004±3.20 12.334±2.21 1.314±0.12 2.821±0.00 2.454±0.69 4.979±1.74 3.681±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0003BV CIL_0003BV_0002 CGP 14:55098578-55116935

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005798 ISS Golgi-associated vesicle
GO:0005802 TAS trans-Golgi network
GO:0006886 TAS intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0016020 ISS membrane
GO:0016192 TAS vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030133 ISS transport vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308724 AP1G2-002 protein_coding Homo_sapiens 0 2562
ENST00000397120 AP1G2-003 protein_coding Homo_sapiens 0 2562
ENST00000460049 AP1G2-001 retained_intron Homo_sapiens 0 1327
ENST00000465445 AP1G2-005 retained_intron Homo_sapiens 0 1218
ENST00000535852 AP1G2-011 retained_intron Homo_sapiens 0 1792
ENST00000553629 AP1G2-006 retained_intron Homo_sapiens 0 774
ENST00000553685 AP1G2-029 retained_intron Homo_sapiens 0 278
ENST00000553756 AP1G2-031 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000554069 AP1G2-034 retained_intron Homo_sapiens 0 774
ENST00000554554 AP1G2-014 retained_intron Homo_sapiens 0 254
ENST00000554816 AP1G2-033 retained_intron Homo_sapiens 0 267
ENST00000554977 AP1G2-028 retained_intron Homo_sapiens 0 470
ENST00000554982 AP1G2-027 retained_intron Homo_sapiens 0 252
ENST00000555118 AP1G2-025 processed_transcript Homo_sapiens 0 355
ENST00000555510 AP1G2-023 processed_transcript Homo_sapiens 0 477
ENST00000555789 AP1G2-019 retained_intron Homo_sapiens 0 219
ENST00000555896 AP1G2-008 retained_intron Homo_sapiens 0 278
ENST00000555974 AP1G2-026 retained_intron Homo_sapiens 0 233
ENST00000556277 AP1G2-035 processed_transcript Homo_sapiens 0 774
ENST00000556741 AP1G2-020 retained_intron Homo_sapiens 0 302
ENST00000556743 AP1G2-007 retained_intron Homo_sapiens 0 278
ENST00000556843 AP1G2-032 protein_coding Homo_sapiens 0 586
ENST00000556943 AP1G2-037 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000556966 AP1G2-022 retained_intron Homo_sapiens 0 196
ENST00000557132 AP1G2-018 retained_intron Homo_sapiens 5e-30 137
ENST00000557162 AP1G2-013 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000557189 AP1G2-036 protein_coding Homo_sapiens 0 817
ENST00000557482 AP1G2-010 retained_intron Homo_sapiens 0 874
ENST00000557619 AP1G2-030 retained_intron Homo_sapiens 0 278

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