C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, Shal-related family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040896 Kcnd3 10090 + 3:105452330-105674002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079169 Kcnd3-201 105458782-105669309 protein_coding
  ENSMUST00000098761 Kcnd3-002 105452330-105674002 protein_coding
  ENSMUST00000118360 Kcnd3-001 105453086-105669460 protein_coding
  ENSMUST00000141694 Kcnd3-003 105452573-105667589 retained_intron
  ENSMUST00000147209 Kcnd3-004 105669005-105669844 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079169ENSMUST00000098761ENSMUST00000118360ENSMUST00000141694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079169 2.832±2.73 0.951±0.41 N/A 3.748±1.27 0.111±0.04 2.711±0.30 2.143±0.25 1.353±0.28 0.022±0.01 0.463±0.07 0.020±0.00 9.348±1.20 N/A 1.098±0.39
ENSMUST00000098761 N/A 0.213±0.02 3.742±2.20 4.975±1.73 0.029±0.01 0.582±0.10 0.553±0.17 N/A 0.032±0.03 0.092±0.00 0.012±0.01 1.702±0.71 0.086±0.01 0.299±0.00
ENSMUST00000118360 0.050±0.00 N/A N/A N/A 0.097±0.00 0.798±0.02 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A
ENSMUST00000141694 0.058±0.00 N/A N/A N/A 0.033±0.00 N/A 0.674±0.09 N/A 0.023±0.02 0.109±0.03 N/A 1.359±0.38 N/A 0.310±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Y CIL_00075Y_0002 CGP 3:105452330-105687574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005250 IBA A-type (transient outward) potassium channel activity
GO:0005267 IEA potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IDA membrane
GO:0030425 IEA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044325 IEA ion channel binding
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0071435 IEA potassium ion export
GO:0086009 IEA membrane repolarization
GO:0097038 IEA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056101 kcnd3 potassium voltage-gated channel, Shal-related subfamily, member 3 protein_coding Danio_rerio
ENSG00000171385 KCND3 potassium voltage-gated channel, Shal-related subfamily, member 3 protein_coding Homo_sapiens

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