C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shal-related family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118360 Kcnd3-001 ENSMUSG00000040896 10090 + 3:105453086-105669460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLungENSMUST00000118360
Transcript ID Adipose Breast Colon Lung
ENSMUST00000118360 0.050±0.00 0.097±0.00 0.798±0.02 0.140±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075Y CIL_00075Y_0002 CGP 3:105452330-105687574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005250 IBA A-type (transient outward) potassium channel activity
GO:0005267 IEA potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IDA membrane
GO:0030425 IEA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044325 IEA ion channel binding
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0071435 IEA potassium ion export
GO:0086009 IEA membrane repolarization
GO:0097038 IEA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042673 kcnd2-201 protein_coding Danio_rerio 0 752
ENSDART00000138890 kcnd2-001 protein_coding Danio_rerio 0 752
ENST00000218176 KCND1-001 protein_coding Homo_sapiens 0 630
ENST00000302127 KCND3-201 protein_coding Homo_sapiens 0 2095
ENST00000315987 KCND3-001 protein_coding Homo_sapiens 0 3064
ENST00000369697 KCND3-002 protein_coding Homo_sapiens 0 1989

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