C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-C motif) receptor 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040899 Ccr6 10090 + 17:8236043-8257127 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097418 Ccr6-201 8242526-8257127 protein_coding
  ENSMUST00000164411 Ccr6-202 8236043-8257127 protein_coding
  ENSMUST00000166348 Ccr6-203 8243807-8257127 protein_coding
  ENSMUST00000167956 Ccr6-204 8243807-8257127 protein_coding
  ENSMUST00000177568 Ccr6-205 8243807-8257127 protein_coding
  ENSMUST00000180103 Ccr6-206 8243807-8257127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000097418ENSMUST00000164411ENSMUST00000166348ENSMUST00000167956ENSMUST00000177568ENSMUST00000180103
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000097418 0.094±0.05 N/A N/A 1.999±0.56 0.418±0.11 0.041±0.00 0.287±0.08 0.092±0.03 0.355±0.07 N/A N/A N/A
ENSMUST00000164411 N/A N/A 0.019±0.00 N/A 0.175±0.00 N/A 0.178±0.02 N/A 0.749±0.00 0.045±0.00 0.026±0.00 N/A
ENSMUST00000166348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.513±0.00
ENSMUST00000167956 0.077±0.04 0.205±0.09 0.008±0.00 4.328±0.82 0.245±0.00 0.198±0.06 0.163±0.18 0.172±0.19 1.199±0.46 0.124±0.10 0.079±0.05 5.473±2.28
ENSMUST00000177568 N/A N/A 0.058±0.00 N/A N/A N/A N/A 0.131±0.04 N/A N/A N/A N/A
ENSMUST00000180103 N/A N/A N/A 1.596±0.00 0.242±0.01 N/A 0.218±0.09 0.060±0.00 0.240±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HA CIL_0002HA_0003 CGP 17:8165501-8257127

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006935 IEA chemotaxis
GO:0006955 IEA immune response
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016493 IEA C-C chemokine receptor activity
GO:0070098 IEA chemokine-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038968 ccr6b chemokine (C-C motif) receptor 6b protein_coding Danio_rerio
ENSDARG00000087474 ccr6a chemokine (C-C motif) receptor 6a protein_coding Danio_rerio
ENSG00000112486 CCR6 chemokine (C-C motif) receptor 6 protein_coding Homo_sapiens
ENSG00000272980 CCR6 chemokine (C-C motif) receptor 6 protein_coding Homo_sapiens

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