C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 62
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041000 Trim62 10090 + 4:128883580-128911328 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035667 Trim62-001 128883588-128911328 protein_coding
  ENSMUST00000147852 Trim62-002 128883580-128903565 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035667ENSMUST00000147852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035667 2.016±0.64 7.329±0.91 12.161±0.57 6.556±3.13 3.037±1.17 3.098±0.42 0.420±0.06 1.281±0.18 0.210±0.04 7.299±0.55 0.241±0.10 8.630±2.78 5.263±3.87 1.769±1.04
ENSMUST00000147852 N/A 2.110±0.01 N/A N/A N/A N/A N/A N/A 0.059±0.01 N/A 0.075±0.01 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789
CIL_0002AB CIL_0002AB_0002 CGP 4:128773088-128911328

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032897 IEA negative regulation of viral transcription
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IEA innate immune response
GO:0046596 IEA regulation of viral entry into host cell
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:1902186 IEA regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060901 trim62 tripartite motif containing 62 protein_coding Danio_rerio
ENSDARG00000095536 TRIM62 (2 of 2) tripartite motif containing 62 protein_coding Danio_rerio
ENSG00000116525 TRIM62 tripartite motif containing 62 protein_coding Homo_sapiens

Loading