C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035667 Trim62-001 ENSMUSG00000041000 10090 + 4:128883588-128911328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035667
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035667 2.016±0.64 7.329±0.91 12.161±0.57 6.556±3.13 3.037±1.17 3.098±0.42 0.420±0.06 1.281±0.18 0.210±0.04 7.299±0.55 0.241±0.10 8.630±2.78 5.263±3.87 1.769±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789
CIL_0002AB CIL_0002AB_0002 CGP 4:128773088-128911328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032897 IEA negative regulation of viral transcription
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IEA innate immune response
GO:0046596 IEA regulation of viral entry into host cell
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:1902186 IEA regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291416 TRIM62-001 protein_coding Homo_sapiens 0 2021
ENST00000485148 TRIM62-004 processed_transcript Homo_sapiens 0 1016
ENST00000486583 TRIM62-005 processed_transcript Homo_sapiens 0 333
ENST00000543586 TRIM62-006 protein_coding Homo_sapiens 0 1354

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