C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphodiesterase 9A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041119 Pde9a 10090 + 17:31386234-31476310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047168 Pde9a-001 31386234-31476310 protein_coding
  ENSMUST00000124902 Pde9a-008 31386274-31476159 nonsense_mediated_decay
  ENSMUST00000127929 Pde9a-002 31386254-31476159 protein_coding
  ENSMUST00000130547 Pde9a-011 31442932-31460191 retained_intron
  ENSMUST00000131417 Pde9a-004 31386249-31476156 nonsense_mediated_decay
  ENSMUST00000134525 Pde9a-006 31386249-31476156 protein_coding
  ENSMUST00000136384 Pde9a-010 31433071-31459129 protein_coding
  ENSMUST00000137927 Pde9a-005 31386262-31476081 nonsense_mediated_decay
  ENSMUST00000141314 Pde9a-009 31386294-31455122 nonsense_mediated_decay
  ENSMUST00000143549 Pde9a-003 31386249-31476156 nonsense_mediated_decay
  ENSMUST00000154392 Pde9a-013 31461628-31476141 protein_coding
  ENSMUST00000154567 Pde9a-007 31386276-31471795 retained_intron
  ENSMUST00000155113 Pde9a-014 31471041-31476106 processed_transcript
  ENSMUST00000155395 Pde9a-012 31453332-31461700 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047168ENSMUST00000124902ENSMUST00000127929ENSMUST00000131417ENSMUST00000134525ENSMUST00000136384ENSMUST00000137927ENSMUST00000141314ENSMUST00000143549ENSMUST00000154392ENSMUST00000154567ENSMUST00000155113ENSMUST00000155395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047168 1.738±0.71 0.279±0.05 5.860±2.46 7.603±2.64 1.623±0.42 24.478±6.39 1.115±0.26 7.026±1.26 4.978±4.33 7.266±1.15 0.173±0.00 1.983±1.42 3.119±0.87 N/A
ENSMUST00000124902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.265±0.00 N/A N/A N/A
ENSMUST00000127929 1.272±0.42 0.259±0.11 4.988±0.88 4.881±2.50 1.705±0.55 27.258±9.96 1.159±0.16 7.062±1.43 3.721±4.52 14.497±5.92 0.262±0.10 2.408±1.36 3.012±0.79 N/A
ENSMUST00000131417 N/A N/A N/A N/A 1.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134525 N/A N/A N/A N/A N/A N/A N/A N/A 0.676±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00 N/A 13.965±0.00 N/A
ENSMUST00000137927 N/A N/A N/A 2.696±0.00 N/A N/A N/A N/A N/A N/A 0.287±0.00 N/A 4.055±1.79 0.245±0.00
ENSMUST00000141314 N/A N/A N/A 8.473±0.00 N/A N/A N/A N/A N/A N/A N/A 1.863±0.00 6.405±0.00 N/A
ENSMUST00000143549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A
ENSMUST00000154392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.12 N/A 9.054±4.83 N/A
ENSMUST00000154567 2.564±1.01 0.552±0.20 2.132±0.00 2.902±0.00 2.095±0.39 42.798±8.98 0.942±0.14 5.624±1.87 2.917±2.41 12.958±3.00 0.162±0.07 2.236±1.13 2.610±1.38 N/A
ENSMUST00000155113 N/A 1.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.619±0.00 6.089±0.00 2.833±1.31
ENSMUST00000155395 6.185±2.75 N/A N/A N/A 3.628±0.87 85.290±23.64 N/A N/A N/A N/A 0.354±0.00 7.825±1.25 6.202±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_0001JT CIL_0001JT_0002 CGP 17:31295483-31476310
CIL_0001D2 CIL_0001D2_0003 CGP 17:31386234-31519974

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0007165 IEA signal transduction
GO:0008152 IDA:IEA metabolic process
GO:0019934 IEA cGMP-mediated signaling
GO:0043204 IEA perikaryon
GO:0046872 IEA metal ion binding
GO:0047555 IDA 3',5'-cyclic-GMP phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060280 pde9a phosphodiesterase 9A protein_coding Danio_rerio
ENSDARG00000088368 PDE9A (2 of 2) phosphodiesterase 9A protein_coding Danio_rerio
ENSG00000160191 PDE9A phosphodiesterase 9A protein_coding Homo_sapiens

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