C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041133 Smc1a 10090 + X:152016428-152062694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045312 Smc1a-001 152016428-152062694 protein_coding
  ENSMUST00000124681 Smc1a-006 152058467-152059508 retained_intron
  ENSMUST00000131395 Smc1a-004 152046628-152047935 retained_intron
  ENSMUST00000135172 Smc1a-003 152036447-152038058 retained_intron
  ENSMUST00000141457 Smc1a-005 152059075-152059780 retained_intron
  ENSMUST00000145518 Smc1a-002 152016428-152036212 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045312ENSMUST00000145518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045312 9.165±2.34 4.413±0.55 7.266±0.02 15.461±3.75 8.169±1.51 5.245±0.41 4.444±0.60 5.912±0.28 13.930±10.74 9.954±1.73 2.608±0.33 13.272±7.22 14.598±8.18 1.008±0.23
ENSMUST00000145518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.414±0.00 13.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B1 CIL_0001B1_0002 CGP X:152004582-152062694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 ISS kinetochore
GO:0003682 ISS chromatin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0007062 IEA sister chromatid cohesion
GO:0007064 IEA mitotic sister chromatid cohesion
GO:0007093 ISS mitotic cell cycle checkpoint
GO:0007126 ISS meiotic nuclear division
GO:0008280 IEA cohesin core heterodimer
GO:0009314 ISS response to radiation
GO:0019827 IMP stem cell maintenance
GO:0030893 ISS meiotic cohesin complex
GO:0032876 IEA negative regulation of DNA endoreduplication
GO:0036033 IDA mediator complex binding
GO:0042770 ISS signal transduction in response to DNA damage
GO:0044822 IEA poly(A) RNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055754 smc1a structural maintenance of chromosomes 1A protein_coding Danio_rerio
ENSDARG00000058203 smc1al structural maintenance of chromosomes 1A, like protein_coding Danio_rerio
ENSG00000072501 SMC1A structural maintenance of chromosomes 1A protein_coding Homo_sapiens

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