C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041453 Rpl21 10090 + 5:146832890-146837032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035983 Rpl21-001 146832890-146837032 protein_coding
  ENSMUST00000075453 Rpl21-002 146833195-146835985 protein_coding
  ENSMUST00000099272 Rpl21-003 146833202-146835986 protein_coding
  ENSMUST00000135345 Rpl21-006 146835206-146835986 retained_intron
  ENSMUST00000151871 Rpl21-005 146834184-146834964 retained_intron
  ENSMUST00000154768 Rpl21-004 146833146-146834605 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035983ENSMUST00000075453ENSMUST00000099272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035983 27.768±5.43 2.890±0.88 136.742±0.00 N/A 18.606±4.74 18.687±6.58 16.433±3.47 28.497±1.10 29.610±32.38 25.382±1.16 17.143±4.73 14.696±2.18 N/A 32.272±4.44
ENSMUST00000075453 25.674±12.46 4.973±2.01 214.976±27.02 100.612±80.14 22.087±5.90 24.464±5.27 23.588±4.64 34.403±13.41 91.778±97.42 33.281±7.75 169.383±14.48 276.047±403.54 291.635±171.56 37.433±43.06
ENSMUST00000099272 N/A N/A N/A 16.501±0.18 N/A N/A N/A N/A N/A N/A N/A 5.729±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0003 CGP 5:146734809-146837032
CIL_0004MI CIL_0004MI_0002 CGP 5:146832890-146847726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010516 rpl21 ribosomal protein L21 protein_coding Danio_rerio
ENSG00000122026 RPL21 ribosomal protein L21 protein_coding Homo_sapiens

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