C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122026 RPL21 9606 + 13:27251309-27256691 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272274 RPL21-003 27251579-27256568 protein_coding
  ENST00000311549 RPL21-001 27251309-27256568 protein_coding
  ENST00000319826 RPL21-004 27251583-27256568 protein_coding
  ENST00000326092 RPL21-005 27251597-27256568 protein_coding
  ENST00000461690 RPL21-007 27251561-27256691 nonsense_mediated_decay
  ENST00000466550 RPL21-006 27253765-27255856 retained_intron
  ENST00000473558 RPL21-002 27251362-27254467 retained_intron
  ENST00000483765 RPL21-008 27253765-27256545 nonsense_mediated_decay
  ENST00000485756 RPL21-010 27254944-27256548 retained_intron
  ENST00000493317 RPL21-009 27253705-27256307 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272274ENST00000311549ENST00000319826ENST00000461690ENST00000483765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272274 N/A N/A 28.168±0.00 88.975±0.00 135.046±0.00 112.676±0.00 47.738±0.71 54.318±23.56 83.698±51.88 91.657±0.00 95.266±0.00 481.038±434.71 502.767±98.24 N/A
ENST00000311549 236.097±0.00 373.720±0.00 N/A 90.493±0.00 197.862±0.00 266.410±0.00 99.638±0.00 139.294±0.00 82.193±0.00 525.742±0.00 202.069±0.00 240.708±64.30 122.704±53.00 109.457±63.93
ENST00000319826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.319±0.00
ENST00000461690 62.820±0.00 139.457±0.00 5.299±0.00 51.650±0.00 87.341±0.00 201.292±0.00 N/A 27.118±14.27 14.805±0.00 N/A N/A N/A N/A 112.685±0.00
ENST00000483765 N/A N/A N/A 41.716±0.00 N/A N/A N/A N/A N/A 38.691±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0002 CGP 13:27066142-27256691
CIL_0004MI CIL_0004MI_0001 CGP 13:27251309-27273690

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010516 rpl21 ribosomal protein L21 protein_coding Danio_rerio
ENSMUSG00000041453 Rpl21 ribosomal protein L21 protein_coding Mus_musculus
ENSMUSG00000072714 Rpl21-ps4 ribosomal protein L21, pseudogene 4 protein_coding Mus_musculus

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