C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151871 Rpl21-005 ENSMUSG00000041453 10090 + 5:146834184-146834964 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GA CIL_0000GA_0003 CGP 5:146734809-146837032
CIL_0004MI CIL_0004MI_0002 CGP 5:146832890-146847726

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 0 202
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 219
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 219
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 219
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 219
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 202
ENST00000401418 RPL21P28-001 processed_pseudogene Homo_sapiens 0 196
ENST00000402896 RPL21P67-001 processed_pseudogene Homo_sapiens 4e-34 148
ENST00000404609 RP3-393E18.1-001 processed_pseudogene Homo_sapiens 1.99993e-41 172
ENST00000406094 RPL21P65-001 processed_pseudogene Homo_sapiens 6e-17 92
ENST00000417077 RP11-339A7.1-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000422509 RP11-405L18.4-001 processed_pseudogene Homo_sapiens 6.00036e-42 174
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000439130 RP11-244N20.7-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000446654 RPL21P23-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000454107 RP11-57G10.1-001 processed_pseudogene Homo_sapiens 8e-31 137
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 5.00264e-43 178
ENST00000460608 CTD-2301A4.3-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000461458 RPL21P11-001 processed_pseudogene Homo_sapiens 0 191
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000465598 RPL21P71-001 processed_pseudogene Homo_sapiens 3e-25 119
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 219
ENST00000471393 RP11-400K9.1-001 processed_pseudogene Homo_sapiens 3e-25 119
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 6.99949e-42 174
ENST00000472300 RP11-16F15.2-001 processed_pseudogene Homo_sapiens 0 196
ENST00000473558 RPL21-002 retained_intron Homo_sapiens 0 224
ENST00000473808 RP11-254G11.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000477341 RP11-734J24.1-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 0 191
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 195
ENST00000483765 RPL21-008 nonsense_mediated_decay Homo_sapiens 2e-27 126
ENST00000485147 RP11-407P2.1-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000486753 RP11-48B14.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000488305 RPL21P13-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000491435 RP11-50D9.1-001 processed_pseudogene Homo_sapiens 0 191
ENST00000493028 RPL21P123-001 transcribed_processed_pseudogene Homo_sapiens 5e-37 158
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 219
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 202
ENST00000497954 RPL21P4-001 processed_pseudogene Homo_sapiens 6.00036e-42 174
ENST00000510061 AC006445.7-001 processed_pseudogene Homo_sapiens 3e-40 169
ENST00000515262 HSPA4L-005 processed_transcript Homo_sapiens 0 207
ENST00000557463 RPL21P7-001 processed_pseudogene Homo_sapiens 9.94922e-44 180
ENST00000559810 RPL21P12-001 processed_pseudogene Homo_sapiens 7e-37 158
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000610672 MED22-007 protein_coding Homo_sapiens 1e-37 163

Loading