C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: corepressor interacting with RBPJ, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041777 Cir1 10090 - 2:73283105-73312701 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058615 Cir1-001 73283105-73312701 protein_coding
  ENSMUST00000136519 Cir1-002 73305919-73312566 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058615ENSMUST00000136519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058615 2.474±0.26 1.148±0.00 8.835±0.31 6.740±2.84 1.808±0.60 1.135±0.24 1.889±0.33 2.976±0.50 9.559±5.59 2.908±0.62 4.527±0.40 2.950±3.20 4.487±1.55 11.326±4.61
ENSMUST00000136519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.047±0.00 7.043±0.00 72.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0002 UCNEbase 2:72378722-73287933
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0004JE CIL_0004JE_0002 CGP 2:73092801-73284706
CIL_0001HA CIL_0001HA_0002 CGP 2:73271925-73312701
CIL_0003IH CIL_0003IH_0003 CGP 2:73283105-73337818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISA nuclear speck
GO:0045892 ISA negative regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044418 CIR1 corepressor interacting with RBPJ, 1 protein_coding Danio_rerio
ENSG00000138433 CIR1 corepressor interacting with RBPJ, 1 protein_coding Homo_sapiens

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