C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044418-ENSDARG00000016611 CGP 7955 9:2456459-2476232
GeneTranscriptPositionBiotype
ENSDARG00000016611 (scrn3)
secernin 3 		ENSDART00000016710 (scrn3-001) 2463941-2476232 protein_coding
ENSDART00000135076 (scrn3-003) 2463982-2469589 protein_coding
ENSDART00000137706 (scrn3-002) 2463981-2468428 retained_intron
ENSDARG00000044418 (CIR1)
corepressor interacting with RBPJ, 1 		ENSDART00000065232 (CIR1-201) 2456459-2462542 protein_coding
ENSDART00000146912 (CIR1-001) 2462469-2462650 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003IH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138433-ENSG00000144306 CGP 9606 2:174348022-174429575
GeneTranscriptPositionBiotype
ENSG00000138433 (CIR1)
corepressor interacting with RBPJ, 1 		ENST00000342016 (CIR1-001) 174348022-174395715 protein_coding
ENST00000377973 (CIR1-007) 174358173-174380680 protein_coding
ENST00000461454 (CIR1-005) 174378687-174395706 retained_intron
ENST00000464393 (CIR1-006) 174349135-174351963 retained_intron
ENST00000472169 (CIR1-004) 174387263-174395709 retained_intron
ENSG00000144306 (SCRN3)
secernin 3 		ENST00000272732 (SCRN3-001) 174395745-174429575 protein_coding
ENST00000409673 (SCRN3-006) 174395745-174428417 protein_coding
ENST00000424069 (SCRN3-009) 174395792-174400103 protein_coding
ENST00000427038 (SCRN3-004) 174395808-174401054 protein_coding
ENST00000435964 (SCRN3-002) 174395752-174398314 protein_coding
ENST00000437944 (SCRN3-008) 174395730-174427864 nonsense_mediated_decay
ENST00000458563 (SCRN3-003) 174395741-174404210 protein_coding
ENST00000475928 (SCRN3-010) 174410344-174428035 processed_transcript
ENST00000488349 (SCRN3-005) 174395795-174397404 processed_transcript
ENST00000490927 (SCRN3-007) 174395743-174424570 processed_transcript
ENST00000548031 (SCRN3-013) 174398195-174404190 protein_coding
ENST00000548868 (SCRN3-011) 174395730-174428317 nonsense_mediated_decay
ENST00000548921 (SCRN3-012) 174410037-174428859 processed_transcript
ENST00000549848 (SCRN3-014) 174410082-174427895 processed_transcript
ENST00000610561 (SCRN3-201) 174395778-174428128 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003IH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041777-ENSMUSG00000008226 CGP 10090 2:73283105-73337818
GeneTranscriptPositionBiotype
ENSMUSG00000008226 (Scrn3)
secernin 3 		ENSMUST00000090811 (Scrn3-001) 73312601-73337818 protein_coding
ENSMUST00000112050 (Scrn3-003) 73312654-73320796 protein_coding
ENSMUST00000123621 (Scrn3-002) 73319400-73336299 processed_transcript
ENSMUST00000139926 (Scrn3-006) 73312676-73322022 processed_transcript
ENSMUST00000154158 (Scrn3-005) 73312659-73329802 processed_transcript
ENSMUST00000155019 (Scrn3-004) 73312659-73315801 processed_transcript
ENSMUSG00000041777 (Cir1)
corepressor interacting with RBPJ, 1 		ENSMUST00000058615 (Cir1-001) 73283105-73312701 protein_coding
ENSMUST00000136519 (Cir1-002) 73305919-73312566 processed_transcript
ENSMUSG00000068859 (Sp9)
trans-acting transcription factor 9 		ENSMUST00000090813 (Sp9-001) 73271925-73277471 protein_coding
ENSMUST00000147133 (Sp9-002) 73271966-73284706 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IH_0001ENSDARG00000016611ENSDART00000016710ENSDART00000135076ENSDART00000137706ENSDARG00000044418ENSDART00000065232ENSDART00000146912CIL_0003IH_0002ENSG00000138433ENST00000342016ENST00000377973ENST00000461454ENST00000464393ENST00000472169ENSG00000144306ENST00000272732ENST00000409673ENST00000424069ENST00000427038ENST00000435964ENST00000437944ENST00000458563ENST00000475928ENST00000488349ENST00000490927ENST00000548031ENST00000548868ENST00000548921ENST00000549848ENST00000610561CIL_0003IH_0003ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000123621ENSMUST00000139926ENSMUST00000154158ENSMUST00000155019ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000068859ENSMUST00000090813ENSMUST00000147133
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IH_0001ENSDARG00000016611ENSDART00000016710ENSDARG00000044418ENSDART00000065232ENSDART00000146912CIL_0003IH_0002ENSG00000138433ENST00000342016ENST00000461454ENST00000464393ENSG00000144306ENST00000272732ENST00000409673ENST00000437944ENST00000475928ENST00000490927ENST00000548031ENST00000549848ENST00000610561CIL_0003IH_0003ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000154158ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000068859ENSMUST00000090813
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016611 ENSDART00000016710 N/A N/A N/A 4.821±3.60 N/A N/A 4.837±1.08 2.424±0.61 0.623±0.00 N/A N/A N/A N/A N/A
ENSDART00000135076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000044418 ENSDART00000065232 N/A N/A N/A 14.383±9.64 N/A N/A 10.646±4.68 9.010±0.00 1.160±0.00 N/A 6.054±0.00 N/A N/A N/A
ENSDART00000146912 N/A N/A N/A 52.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138433 ENST00000342016 8.042±0.00 N/A 0.394±0.00 7.415±5.92 4.199±3.16 5.954±5.42 3.459±3.19 6.991±0.00 1.993±0.38 4.413±3.52 2.710±2.59 7.489±4.07 10.518±1.75 18.741±0.80
ENST00000377973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461454 N/A N/A 1.958±0.00 0.893±0.00 2.016±0.00 1.452±0.00 0.990±0.00 N/A 1.874±0.00 4.502±0.00 0.572±0.00 2.286±0.00 N/A N/A
ENST00000464393 N/A N/A N/A N/A 3.622±0.00 N/A N/A N/A N/A 4.515±0.00 N/A N/A N/A N/A
ENST00000472169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144306 ENST00000272732 N/A N/A 0.335±0.00 1.211±0.21 1.589±0.74 N/A 0.453±0.00 1.228±0.00 N/A N/A N/A N/A 1.076±0.00 1.485±0.00
ENST00000409673 0.898±0.00 N/A 2.246±0.00 1.968±0.00 1.029±0.33 N/A 0.823±0.00 N/A 1.639±0.00 N/A N/A 3.200±0.00 1.169±0.00 1.580±0.00
ENST00000424069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.900±0.00 3.367±0.00
ENST00000458563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.656±0.00 N/A N/A
ENST00000488349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490927 1.552±0.00 N/A N/A 4.393±2.21 2.679±0.80 0.888±0.00 1.993±0.00 3.951±0.00 2.057±0.00 1.043±0.00 N/A 3.299±0.00 2.736±0.00 2.891±0.32
ENST00000548031 N/A N/A 2.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.394±0.00 6.324±0.00
ENST00000548868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549848 N/A N/A N/A N/A 1.205±0.00 1.692±0.00 N/A N/A 2.118±0.00 0.570±0.00 N/A 5.854±1.87 1.844±0.00 N/A
ENST00000610561 N/A N/A N/A 3.536±0.00 N/A 0.774±0.00 N/A 1.661±0.00 1.904±0.00 1.834±0.00 2.414±0.00 1.636±0.09 2.576±0.00 1.840±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008226 ENSMUST00000090811 2.828±0.89 2.211±0.67 5.306±0.92 N/A 3.902±1.41 1.436±0.72 3.184±0.22 6.405±1.70 10.564±2.38 3.266±0.89 16.625±0.86 2.775±1.25 3.272±1.23 1.533±0.01
ENSMUST00000112050 3.260±1.10 3.264±0.51 3.406±0.39 N/A 1.647±0.61 1.649±0.20 1.379±0.00 3.860±0.61 7.723±2.61 3.112±0.37 N/A 2.757±1.16 4.487±2.22 N/A
ENSMUST00000123621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154158 N/A N/A N/A 23.476±0.00 N/A N/A N/A N/A N/A N/A N/A 23.273±0.00 17.833±7.12 N/A
ENSMUST00000155019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041777 ENSMUST00000058615 2.474±0.26 1.148±0.00 8.835±0.31 6.740±2.84 1.808±0.60 1.135±0.24 1.889±0.33 2.976±0.50 9.559±5.59 2.908±0.62 4.527±0.40 2.950±3.20 4.487±1.55 11.326±4.61
ENSMUST00000136519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.047±0.00 7.043±0.00 72.848±0.00
ENSMUSG00000068859 ENSMUST00000090813 N/A N/A N/A 7.506±1.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading