C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000217236-ENSG00000138433 CGP 9606 2:174334946-174395715
GeneTranscriptPositionBiotype
ENSG00000138433 (CIR1)
corepressor interacting with RBPJ, 1 		ENST00000342016 (CIR1-001) 174348022-174395715 protein_coding
ENST00000377973 (CIR1-007) 174358173-174380680 protein_coding
ENST00000461454 (CIR1-005) 174378687-174395706 retained_intron
ENST00000464393 (CIR1-006) 174349135-174351963 retained_intron
ENST00000472169 (CIR1-004) 174387263-174395709 retained_intron
ENSG00000217236 (SP9)
Sp9 transcription factor 		ENST00000394967 (SP9-001) 174334946-174338492 protein_coding
ENSG00000280414 (RP11-572N21.1)
 ENST00000624790 (RP11-572N21.1-001) 174334438-174337566 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0001HA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000068859-ENSMUSG00000041777 CGP 10090 2:73271925-73312701
GeneTranscriptPositionBiotype
ENSMUSG00000008226 (Scrn3)
secernin 3 		ENSMUST00000090811 (Scrn3-001) 73312601-73337818 protein_coding
ENSMUST00000112050 (Scrn3-003) 73312654-73320796 protein_coding
ENSMUST00000123621 (Scrn3-002) 73319400-73336299 processed_transcript
ENSMUST00000139926 (Scrn3-006) 73312676-73322022 processed_transcript
ENSMUST00000154158 (Scrn3-005) 73312659-73329802 processed_transcript
ENSMUST00000155019 (Scrn3-004) 73312659-73315801 processed_transcript
ENSMUSG00000041777 (Cir1)
corepressor interacting with RBPJ, 1 		ENSMUST00000058615 (Cir1-001) 73283105-73312701 protein_coding
ENSMUST00000136519 (Cir1-002) 73305919-73312566 processed_transcript
ENSMUSG00000068859 (Sp9)
trans-acting transcription factor 9 		ENSMUST00000090813 (Sp9-001) 73271925-73277471 protein_coding
ENSMUST00000147133 (Sp9-002) 73271966-73284706 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HA_0001ENSG00000138433ENST00000342016ENST00000377973ENST00000461454ENST00000464393ENST00000472169ENSG00000217236ENST00000394967ENSG00000280414ENST00000624790CIL_0001HA_0002ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000123621ENSMUST00000139926ENSMUST00000154158ENSMUST00000155019ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000068859ENSMUST00000090813ENSMUST00000147133
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HA_0001ENSG00000138433ENST00000342016ENST00000461454ENST00000464393ENSG00000217236ENST00000394967ENSG00000280414ENST00000624790CIL_0001HA_0002ENSMUSG00000008226ENSMUST00000090811ENSMUST00000112050ENSMUST00000154158ENSMUSG00000041777ENSMUST00000058615ENSMUST00000136519ENSMUSG00000068859ENSMUST00000090813
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138433 ENST00000342016 8.042±0.00 N/A 0.394±0.00 7.415±5.92 4.199±3.16 5.954±5.42 3.459±3.19 6.991±0.00 1.993±0.38 4.413±3.52 2.710±2.59 7.489±4.07 10.518±1.75 18.741±0.80
ENST00000377973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461454 N/A N/A 1.958±0.00 0.893±0.00 2.016±0.00 1.452±0.00 0.990±0.00 N/A 1.874±0.00 4.502±0.00 0.572±0.00 2.286±0.00 N/A N/A
ENST00000464393 N/A N/A N/A N/A 3.622±0.00 N/A N/A N/A N/A 4.515±0.00 N/A N/A N/A N/A
ENST00000472169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217236 ENST00000394967 N/A N/A N/A 0.930±0.41 0.092±0.00 N/A N/A N/A N/A N/A 0.176±0.00 0.208±0.18 0.043±0.02 0.619±0.13
ENSG00000280414 ENST00000624790 N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A 0.215±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008226 ENSMUST00000090811 2.828±0.89 2.211±0.67 5.306±0.92 N/A 3.902±1.41 1.436±0.72 3.184±0.22 6.405±1.70 10.564±2.38 3.266±0.89 16.625±0.86 2.775±1.25 3.272±1.23 1.533±0.01
ENSMUST00000112050 3.260±1.10 3.264±0.51 3.406±0.39 N/A 1.647±0.61 1.649±0.20 1.379±0.00 3.860±0.61 7.723±2.61 3.112±0.37 N/A 2.757±1.16 4.487±2.22 N/A
ENSMUST00000123621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154158 N/A N/A N/A 23.476±0.00 N/A N/A N/A N/A N/A N/A N/A 23.273±0.00 17.833±7.12 N/A
ENSMUST00000155019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041777 ENSMUST00000058615 2.474±0.26 1.148±0.00 8.835±0.31 6.740±2.84 1.808±0.60 1.135±0.24 1.889±0.33 2.976±0.50 9.559±5.59 2.908±0.62 4.527±0.40 2.950±3.20 4.487±1.55 11.326±4.61
ENSMUST00000136519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.047±0.00 7.043±0.00 72.848±0.00
ENSMUSG00000068859 ENSMUST00000090813 N/A N/A N/A 7.506±1.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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