C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box N4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042002 Foxn4 10090 - 5:114254164-114273807 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044790 Foxn4-001 114254164-114273807 protein_coding
  ENSMUST00000129530 Foxn4-002 114255581-114263120 nonsense_mediated_decay
  ENSMUST00000144050 Foxn4-003 114260356-114273702 protein_coding
  ENSMUST00000147953 Foxn4-004 114262706-114273749 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryTestisENSMUST00000044790ENSMUST00000129530ENSMUST00000144050
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Testis
ENSMUST00000044790 0.008±0.00 N/A 0.189±0.13 0.020±0.00 0.011±0.00 0.269±0.13 0.310±0.18 0.091±0.05
ENSMUST00000129530 N/A N/A N/A N/A 0.006±0.00 0.109±0.00 0.211±0.12 N/A
ENSMUST00000144050 N/A 0.047±0.00 N/A N/A 0.076±0.00 0.192±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VV CIL_0001VV_0002 CGP 5:114146535-114273807
CIL_0001VO CIL_0001VO_0002 CGP 5:114254164-114364576

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001947 ISS heart looping
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008016 ISS regulation of heart contraction
GO:0010842 IMP retina layer formation
GO:0030154 IMP cell differentiation
GO:0035881 IMP amacrine cell differentiation
GO:0036302 ISS atrioventricular canal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048663 IGI neuron fate commitment
GO:0060579 IMP ventral spinal cord interneuron fate commitment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000139445 FOXN4 forkhead box N4 protein_coding Homo_sapiens

Loading