C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000076555-ENSG00000139445 CGP 9606 12:109116595-109309220
GeneTranscriptPositionBiotype
ENSG00000076555 (ACACB)
acetyl-CoA carboxylase beta 		ENST00000338432 (ACACB-001) 109116595-109268226 protein_coding
ENST00000377848 (ACACB-201) 109139397-109268223 protein_coding
ENST00000377854 (ACACB-202) 109139397-109260147 protein_coding
ENST00000396233 (ACACB-012) 109248958-109253061 retained_intron
ENST00000534852 (ACACB-011) 109241223-109242667 retained_intron
ENST00000536440 (ACACB-013) 109245714-109252578 nonsense_mediated_decay
ENST00000537279 (ACACB-014) 109263022-109266941 retained_intron
ENST00000537347 (ACACB-010) 109241670-109246386 retained_intron
ENST00000538526 (ACACB-004) 109232669-109266555 nonsense_mediated_decay
ENST00000539864 (ACACB-005) 109131358-109139910 protein_coding
ENST00000542524 (ACACB-009) 109235307-109236377 retained_intron
ENST00000543080 (ACACB-007) 109175977-109180040 processed_transcript
ENST00000544651 (ACACB-008) 109191478-109191918 retained_intron
ENST00000544726 (ACACB-002) 109154682-109172311 protein_coding
ENST00000546328 (ACACB-006) 109139979-109167280 retained_intron
ENSG00000139445 (FOXN4)
forkhead box N4 		ENST00000299162 (FOXN4-001) 109277980-109309220 protein_coding
ENST00000355216 (FOXN4-002) 109277979-109309220 protein_coding
ENST00000423960 (FOXN4-004) 109279761-109290252 nonsense_mediated_decay
ENST00000468516 (FOXN4-005) 109277979-109286723 protein_coding
ENSG00000256139 (RP11-968O1.5)
 ENST00000541704 (RP11-968O1.5-001) 109111218-109125594 sense_overlapping
CIL_0001VV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042010-ENSMUSG00000042002 CGP 10090 5:114146535-114273807
GeneTranscriptPositionBiotype
ENSMUSG00000042002 (Foxn4)
forkhead box N4 		ENSMUST00000044790 (Foxn4-001) 114254164-114273807 protein_coding
ENSMUST00000129530 (Foxn4-002) 114255581-114263120 nonsense_mediated_decay
ENSMUST00000144050 (Foxn4-003) 114260356-114273702 protein_coding
ENSMUST00000147953 (Foxn4-004) 114262706-114273749 retained_intron
ENSMUSG00000042010 (Acacb)
acetyl-Coenzyme A carboxylase beta 		ENSMUST00000031583 (Acacb-201) 114165518-114250755 protein_coding
ENSMUST00000102582 (Acacb-001) 114146535-114250761 protein_coding
ENSMUST00000142489 (Acacb-004) 114248333-114248958 processed_transcript
ENSMUST00000143276 (Acacb-003) 114199779-114250759 processed_transcript
ENSMUST00000146841 (Acacb-002) 114175906-114190338 protein_coding
ENSMUSG00000084243 (Gm13784)
predicted gene 13784 		ENSMUST00000119639 (Gm13784-001) 114237176-114237925 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VV_0001ENSG00000076555ENST00000338432ENST00000377848ENST00000377854ENST00000396233ENST00000534852ENST00000536440ENST00000537279ENST00000537347ENST00000538526ENST00000539864ENST00000542524ENST00000543080ENST00000544651ENST00000544726ENST00000546328ENSG00000139445ENST00000299162ENST00000355216ENST00000423960ENST00000468516ENSG00000256139ENST00000541704CIL_0001VV_0002ENSMUSG00000042002ENSMUST00000044790ENSMUST00000129530ENSMUST00000144050ENSMUST00000147953ENSMUSG00000042010ENSMUST00000031583ENSMUST00000102582ENSMUST00000142489ENSMUST00000143276ENSMUST00000146841ENSMUSG00000084243ENSMUST00000119639
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VV_0001ENSG00000076555ENST00000338432ENST00000377848ENST00000377854ENST00000396233ENST00000538526ENSG00000139445ENST00000299162ENST00000355216ENST00000423960ENST00000468516ENSG00000256139ENST00000541704CIL_0001VV_0002ENSMUSG00000042002ENSMUST00000044790ENSMUST00000129530ENSMUST00000144050ENSMUSG00000042010ENSMUST00000031583ENSMUST00000102582ENSMUST00000143276ENSMUSG00000084243ENSMUST00000119639
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076555 ENST00000338432 N/A N/A N/A N/A N/A N/A 6.279±3.23 N/A N/A N/A 21.541±9.46 0.849±0.64 N/A 0.843±0.00
ENST00000377848 13.246±0.00 N/A 0.637±0.00 N/A 30.371±29.10 N/A 10.877±0.00 7.799±1.81 17.889±0.00 1.037±0.29 37.553±0.00 1.001±0.74 0.469±0.02 1.382±0.00
ENST00000377854 N/A N/A 2.169±0.00 N/A 1.680±0.00 2.579±0.00 N/A 4.775±0.00 4.553±0.00 1.800±0.00 N/A 0.811±0.00 N/A N/A
ENST00000396233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.580±0.00 N/A N/A
ENST00000534852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538526 N/A 2.960±0.00 N/A N/A 37.574±0.00 N/A N/A N/A N/A 0.711±0.00 N/A 1.209±0.51 N/A 4.984±0.23
ENST00000539864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139445 ENST00000299162 N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A 3.238±1.00
ENST00000355216 N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A 0.077±0.01 N/A 0.023±0.00 N/A 0.401±0.00
ENST00000423960 N/A N/A N/A N/A 0.082±0.00 N/A N/A 0.062±0.00 N/A N/A N/A 0.168±0.16 0.041±0.00 15.967±0.00
ENST00000468516 0.053±0.00 0.022±0.00 0.157±0.00 0.062±0.00 0.200±0.00 0.010±0.00 N/A N/A N/A N/A 0.223±0.00 0.036±0.00 0.031±0.00 2.423±0.67
ENSG00000256139 ENST00000541704 0.513±0.00 0.315±0.00 N/A 0.096±0.00 0.185±0.00 0.814±0.00 0.367±0.07 0.441±0.00 0.139±0.00 0.823±0.72 0.092±0.00 0.648±0.33 0.257±0.10 0.229±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042002 ENSMUST00000044790 0.008±0.00 N/A N/A 0.189±0.13 0.020±0.00 N/A 0.011±0.00 N/A N/A 0.269±0.13 N/A 0.310±0.18 N/A 0.091±0.05
ENSMUST00000129530 N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.109±0.00 N/A 0.211±0.12 N/A N/A
ENSMUST00000144050 N/A 0.047±0.00 N/A N/A N/A N/A 0.076±0.00 N/A N/A 0.192±0.00 N/A N/A N/A N/A
ENSMUST00000147953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042010 ENSMUST00000031583 11.895±2.29 21.258±3.68 N/A 0.144±0.00 24.804±10.14 2.261±0.37 17.592±2.81 4.619±1.09 3.445±3.34 3.306±0.84 23.693±2.85 2.407±0.72 0.305±0.05 0.447±0.16
ENSMUST00000102582 4.258±0.34 N/A 0.620±0.13 0.070±0.00 6.122±0.82 N/A 9.994±0.44 2.697±0.40 1.758±0.88 1.857±0.00 17.472±1.78 1.155±0.62 0.360±0.07 0.173±0.06
ENSMUST00000142489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143276 9.005±0.58 N/A 0.461±0.04 0.129±0.00 13.163±0.76 0.814±0.00 13.015±2.71 4.031±1.51 3.518±2.17 2.503±0.39 N/A 1.650±0.23 1.552±0.81 0.401±0.04
ENSMUST00000146841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084243 ENSMUST00000119639 0.895±0.58 2.167±1.04 0.080±0.04 0.064±0.02 3.032±0.86 0.433±0.19 1.000±0.26 0.312±0.19 0.985±0.86 0.463±0.15 0.255±0.14 0.487±0.24 0.079±0.04 0.117±0.04

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