C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box N4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139445 FOXN4 9606 - 12:109277979-109309220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299162 FOXN4-001 109277980-109309220 protein_coding
  ENST00000355216 FOXN4-002 109277979-109309220 protein_coding
  ENST00000423960 FOXN4-004 109279761-109290252 nonsense_mediated_decay
  ENST00000468516 FOXN4-005 109277979-109286723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000299162ENST00000355216ENST00000423960ENST00000468516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000299162 N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A 0.178±0.00 N/A 3.238±1.00
ENST00000355216 N/A N/A N/A N/A N/A N/A 0.105±0.00 0.077±0.01 N/A 0.023±0.00 N/A 0.401±0.00
ENST00000423960 N/A N/A N/A N/A 0.082±0.00 N/A 0.062±0.00 N/A N/A 0.168±0.16 0.041±0.00 15.967±0.00
ENST00000468516 0.053±0.00 0.022±0.00 0.157±0.00 0.062±0.00 0.200±0.00 0.010±0.00 N/A N/A 0.223±0.00 0.036±0.00 0.031±0.00 2.423±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VV CIL_0001VV_0001 CGP 12:109116595-109309220
CIL_0001VO CIL_0001VO_0001 CGP 12:109277979-109455523

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001158 ISS enhancer sequence-specific DNA binding
GO:0001947 ISS heart looping
GO:0003682 ISS chromatin binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS:IEA regulation of transcription, DNA-templated
GO:0008016 ISS regulation of heart contraction
GO:0010842 ISS retina layer formation
GO:0030154 IEA cell differentiation
GO:0035881 ISS amacrine cell differentiation
GO:0036302 ISS atrioventricular canal development
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0048663 IEA neuron fate commitment
GO:0060579 ISS ventral spinal cord interneuron fate commitment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000042002 Foxn4 forkhead box N4 protein_coding Mus_musculus

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