C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044790 Foxn4-001 ENSMUSG00000042002 10090 - 5:114254164-114273807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungOvaryTestisENSMUST00000044790
Transcript ID Adipose Brain Breast Heart Lung Ovary Testis
ENSMUST00000044790 0.008±0.00 0.189±0.13 0.020±0.00 0.011±0.00 0.269±0.13 0.310±0.18 0.091±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VV CIL_0001VV_0002 CGP 5:114146535-114273807
CIL_0001VO CIL_0001VO_0002 CGP 5:114254164-114364576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001947 ISS heart looping
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008016 ISS regulation of heart contraction
GO:0010842 IMP retina layer formation
GO:0030154 IMP cell differentiation
GO:0035881 IMP amacrine cell differentiation
GO:0036302 ISS atrioventricular canal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048663 IGI neuron fate commitment
GO:0060579 IMP ventral spinal cord interneuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299162 FOXN4-001 protein_coding Homo_sapiens 0 1321
ENST00000355216 FOXN4-002 protein_coding Homo_sapiens 0 992
ENST00000423960 FOXN4-004 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000468516 FOXN4-005 protein_coding Homo_sapiens 0 213

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